Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HF888_RS04160 Genome accession   NZ_CP051183
Coordinates   911634..913028 (-) Length   464 a.a.
NCBI ID   WP_007016744.1    Uniprot ID   Q1MYR4
Organism   Bermanella marisrubri strain RED65     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 906634..918028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF888_RS04130 (HF888_04130) - 908138..908443 (-) 306 WP_007016738.1 hypothetical protein -
  HF888_RS04135 (HF888_04135) - 908452..908934 (-) 483 WP_007016739.1 PilX N-terminal domain-containing pilus assembly protein -
  HF888_RS04140 (HF888_04140) - 908952..909767 (-) 816 WP_007016740.1 PilW family protein -
  HF888_RS04145 (HF888_04145) pilV 909767..910378 (-) 612 WP_007016741.1 type IV pilus modification protein PilV -
  HF888_RS04150 (HF888_04150) - 910389..910877 (-) 489 WP_007016742.1 GspH/FimT family pseudopilin -
  HF888_RS04155 (HF888_04155) - 911003..911557 (-) 555 WP_007016743.1 GspH/FimT family pseudopilin -
  HF888_RS04160 (HF888_04160) pilR 911634..913028 (-) 1395 WP_007016744.1 sigma-54 dependent transcriptional regulator Regulator
  HF888_RS04165 (HF888_04165) - 913164..915359 (-) 2196 WP_007016745.1 OsmC domain/YcaO domain-containing protein -
  HF888_RS04170 (HF888_04170) - 915459..917003 (-) 1545 WP_007016746.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51233.73 Da        Isoelectric Point: 5.3700

>NTDB_id=436694 HF888_RS04160 WP_007016744.1 911634..913028(-) (pilR) [Bermanella marisrubri strain RED65]
MQRILLLDDEPDILNLFLLTVKRMGLEATTAKTIADAKEALANQSFALCLTDMRLPDGSGMDLIKYMQKHHRRTPVVMIT
AYGTMDVAIDAMKLGAFDFLSKPVELDKLRSIIENAIILSEDAESELTDPTPASTGIIGDSPAIKRLHKQIGKVGRSHAP
VFIYGESGTGKELVARAIHSLGPRREKPFITVNCGAIPSELMESEFFGHVRGAFTGANTAKEGFFQAANGGTLFLDEVAD
LPLAMQVKLLRAIQENVVRPVGSETEHKVDVRILSASHKDLQALVTDNQFREDLFYRLDVIRLEVPPLRERSEDIPAIAK
HILKRQLEELGLASMTLGSEALSALQQHTFPGNVRELENLLQRAITLSENQTITAEDLALTATNKKVIDSGEAQPSMAQN
TPNTVANSHSLPAGMTLEDYLEDIETQLIQQALEDCRWNKTAAAEQLGMSFRSLRYRLKKLNID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=436694 HF888_RS04160 WP_007016744.1 911634..913028(-) (pilR) [Bermanella marisrubri strain RED65]
ATGCAACGCATTCTGTTACTCGATGATGAGCCGGACATCCTTAACCTATTCCTATTGACGGTAAAGCGAATGGGACTCGA
GGCAACGACCGCAAAAACCATTGCCGATGCTAAGGAAGCCTTAGCCAACCAAAGCTTTGCCCTATGCCTTACTGACATGC
GTTTGCCGGATGGCTCAGGAATGGACTTGATAAAGTACATGCAAAAGCATCATCGCCGCACCCCTGTGGTCATGATTACG
GCCTATGGCACCATGGACGTCGCCATCGATGCCATGAAATTAGGCGCGTTCGACTTTCTGTCCAAACCGGTGGAACTGGA
TAAACTCAGATCCATCATCGAAAACGCCATCATTCTCAGCGAAGACGCTGAATCCGAACTAACAGACCCCACTCCGGCCT
CCACTGGCATTATTGGGGATAGCCCGGCCATCAAGCGACTCCACAAGCAAATTGGCAAAGTCGGTCGCAGCCATGCGCCA
GTATTTATTTACGGAGAGTCAGGCACGGGTAAGGAGCTAGTTGCAAGGGCCATTCACAGCCTAGGACCCAGACGGGAAAA
GCCCTTTATCACGGTCAACTGTGGCGCAATCCCTAGCGAACTCATGGAGAGTGAGTTTTTCGGTCATGTGCGAGGTGCGT
TTACCGGAGCCAATACCGCCAAAGAAGGCTTTTTTCAAGCTGCAAACGGCGGTACGTTATTTTTAGATGAAGTCGCAGAT
TTGCCCCTAGCCATGCAGGTCAAACTATTGCGCGCCATTCAAGAAAACGTCGTTCGTCCCGTTGGCAGCGAAACCGAGCA
TAAAGTCGATGTGCGTATTTTGTCCGCCAGCCATAAAGATTTGCAGGCACTGGTGACCGATAATCAGTTCCGCGAAGATC
TGTTTTATCGCCTCGATGTAATTCGACTTGAAGTCCCGCCTCTACGTGAACGCAGTGAAGATATCCCCGCCATTGCCAAA
CACATACTAAAAAGACAGCTTGAGGAGTTAGGATTGGCGTCCATGACACTAGGAAGTGAAGCGCTGAGCGCTCTGCAGCA
ACATACCTTCCCTGGAAATGTGCGCGAATTAGAAAATTTACTACAGCGAGCGATTACATTATCGGAAAACCAGACTATTA
CTGCTGAGGATTTAGCCTTAACCGCCACAAACAAAAAGGTAATCGACTCTGGAGAAGCGCAGCCCTCCATGGCGCAAAAC
ACACCGAATACGGTCGCTAATAGCCATAGCCTACCTGCCGGCATGACTCTAGAAGATTATTTAGAGGACATAGAAACCCA
GCTGATTCAGCAGGCCCTCGAAGACTGTCGCTGGAATAAAACCGCGGCAGCGGAACAACTAGGAATGAGCTTTCGATCCC
TACGATATCGCCTTAAAAAGCTAAACATTGACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(4-113)

Sigma-54 interaction domain (Sigma54_activat)

(137-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1MYR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

56.803

99.784

0.567
  pilR Acinetobacter baumannii strain A118

47.629

100

0.476
  luxO Vibrio cholerae strain A1552

38.074

98.491

0.375