Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HF313_RS29470 Genome accession   NZ_CP051166
Coordinates   6865417..6866838 (-) Length   473 a.a.
NCBI ID   WP_126077884.1    Uniprot ID   -
Organism   Massilia atriviolacea strain SOD     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6860417..6871838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF313_RS29460 (HF313_29370) - 6860559..6861683 (-) 1125 WP_126077882.1 ribonucleotide-diphosphate reductase subunit beta -
  HF313_RS29465 (HF313_29375) - 6861789..6864749 (-) 2961 WP_126077883.1 ribonucleoside-diphosphate reductase subunit alpha -
  HF313_RS29470 (HF313_29380) pilR 6865417..6866838 (-) 1422 WP_126077884.1 sigma-54 dependent transcriptional regulator Regulator
  HF313_RS29475 (HF313_29385) - 6866835..6868574 (-) 1740 WP_126077885.1 PAS domain-containing sensor histidine kinase -
  HF313_RS29480 (HF313_29390) - 6868574..6868837 (-) 264 WP_126077886.1 PP0621 family protein -
  HF313_RS29485 (HF313_29395) - 6868834..6869637 (-) 804 WP_126077887.1 inner membrane protein YpjD -
  HF313_RS29490 (HF313_29400) - 6869705..6870502 (-) 798 WP_126077888.1 ABC transporter ATP-binding protein -
  HF313_RS29495 (HF313_29405) - 6870504..6871319 (-) 816 WP_126077889.1 ABC transporter permease -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 50542.91 Da        Isoelectric Point: 4.8387

>NTDB_id=436491 HF313_RS29470 WP_126077884.1 6865417..6866838(-) (pilR) [Massilia atriviolacea strain SOD]
MTSPRVLVVDDEADLRELLEITLVRMGLDVDSAETLREARAFLAQNDYALILTDMRLPDGLGLELVQEVGASNKSTPIAV
VTAYGSADNAVVALKAGAFDYVSKPVVLDDLRVMVQSALRLSAPSAQAGSPAAAGSASRLIGESAVMQALRGQIERLARS
MAPIAITGESGSGKELVAREIHARSSRAGKPFIAVNCGAIPEALMEAEFFGYRKGAFTGAADERDGFFHAANGGTLMLDE
VADLPLAMQVKLLRAIQERRVRKIGATAEEPVDVRIISATHQNLAHCVETGKFRQDLFYRLNVIELSVPPLRERLDDLGV
LVNGMLARLAGPGQQAALGPQVLETLRTYSFPGNVRELENVLERALAFANDGVIEVGDLSLKGARVAERPAPEAAAAAPA
APAAPAAPAQVAAAPAELPSSLPDYLEQVEREIILRALAQTQFNRTQAAMLLGISFRQLRYQMQKLDIQEPEG

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=436491 HF313_RS29470 WP_126077884.1 6865417..6866838(-) (pilR) [Massilia atriviolacea strain SOD]
ATGACATCACCCCGCGTACTGGTCGTCGATGACGAGGCGGATTTACGCGAACTGCTGGAAATCACGCTGGTCAGGATGGG
GCTCGATGTGGACAGCGCCGAGACGCTGCGCGAGGCGCGCGCCTTCCTGGCGCAAAACGATTACGCCCTGATCCTGACCG
ACATGCGCCTGCCCGACGGCCTGGGCCTGGAACTGGTGCAGGAAGTCGGCGCCTCGAACAAATCGACCCCGATCGCGGTG
GTGACCGCCTACGGCAGCGCCGACAACGCGGTGGTGGCCCTGAAGGCGGGCGCCTTCGATTACGTCTCCAAGCCGGTGGT
GCTGGACGACTTGCGGGTGATGGTGCAGTCGGCCCTGCGCCTGTCGGCGCCGTCCGCGCAGGCGGGCAGCCCGGCCGCCG
CCGGCAGCGCCTCGCGCCTGATCGGCGAATCGGCCGTGATGCAGGCGCTGCGCGGCCAGATCGAGCGGCTGGCGCGCTCG
ATGGCGCCGATCGCCATCACCGGCGAGTCGGGCAGCGGCAAGGAACTGGTGGCGCGCGAAATCCACGCGCGCAGCTCGCG
CGCCGGCAAGCCCTTCATCGCCGTGAACTGCGGCGCGATTCCCGAAGCGCTGATGGAAGCGGAGTTTTTCGGCTACCGCA
AGGGCGCGTTTACGGGCGCGGCCGACGAGCGCGACGGGTTCTTCCATGCGGCCAACGGCGGCACCCTGATGCTCGACGAA
GTGGCCGACCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCGGCGCGTGCGCAAGATCGGCGCGAC
CGCCGAGGAGCCGGTCGACGTGCGCATCATCAGCGCCACCCACCAGAACCTGGCGCACTGCGTCGAAACCGGCAAGTTCC
GGCAAGATCTGTTTTACCGCCTGAATGTGATCGAGCTGAGCGTGCCGCCGCTGCGCGAGCGCCTCGACGACCTGGGCGTG
CTGGTTAACGGCATGCTGGCGCGCCTGGCCGGGCCGGGGCAGCAGGCCGCGCTCGGGCCGCAGGTGCTGGAAACCTTGCG
CACCTATTCCTTCCCCGGCAATGTGCGCGAGCTGGAGAACGTGCTGGAACGGGCGCTGGCGTTCGCCAACGATGGCGTGA
TCGAGGTCGGCGACCTGTCGCTGAAAGGGGCGCGCGTGGCCGAGCGGCCGGCGCCCGAGGCGGCGGCTGCGGCACCGGCC
GCACCGGCCGCACCGGCGGCGCCGGCCCAGGTGGCGGCCGCGCCGGCGGAGCTGCCCAGCAGCCTGCCCGATTACCTGGA
ACAGGTCGAACGCGAGATCATCCTGCGCGCGCTGGCCCAGACCCAGTTCAACCGCACCCAGGCGGCCATGCTGCTGGGGA
TCAGTTTCCGCCAGCTGCGCTACCAGATGCAGAAGCTCGATATCCAGGAGCCGGAAGGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

54.468

99.366

0.541
  pilR Acinetobacter baumannii strain A118

46.709

99.577

0.465
  luxO Vibrio cholerae strain A1552

37.879

97.674

0.37