Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HF583_RS13420 Genome accession   NZ_CP051149
Coordinates   2770088..2770594 (-) Length   168 a.a.
NCBI ID   WP_037541942.1    Uniprot ID   A0A3D8YJV6
Organism   Staphylococcus pseudintermedius strain 6109     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2765088..2775594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF583_RS13405 (HF583_13425) - 2766305..2768296 (+) 1992 WP_037541940.1 catalase -
  HF583_RS13410 (HF583_13430) - 2768510..2769601 (-) 1092 WP_037541941.1 Abi family protein -
  HF583_RS13415 (HF583_13435) rpsR 2769792..2770034 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  HF583_RS13420 (HF583_13440) ssbA 2770088..2770594 (-) 507 WP_037541942.1 single-stranded DNA-binding protein Machinery gene
  HF583_RS13425 (HF583_13445) rpsF 2770617..2770913 (-) 297 WP_037541943.1 30S ribosomal protein S6 -
  HF583_RS13430 (HF583_13450) sbi 2771250..2772737 (+) 1488 WP_037541944.1 Ig-binding surface protein Sbi/SpsK -
  HF583_RS13435 (HF583_13455) - 2772791..2773600 (-) 810 WP_037541946.1 ABC transporter permease subunit -
  HF583_RS13440 (HF583_13460) - 2773593..2774528 (-) 936 WP_014614924.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18761.46 Da        Isoelectric Point: 5.6586

>NTDB_id=436253 HF583_RS13420 WP_037541942.1 2770088..2770594(-) (ssbA) [Staphylococcus pseudintermedius strain 6109]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPAHDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=436253 HF583_RS13420 WP_037541942.1 2770088..2770594(-) (ssbA) [Staphylococcus pseudintermedius strain 6109]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTCACGATAACCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3D8YJV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.205

100

0.673
  ssb Latilactobacillus sakei subsp. sakei 23K

56.395

100

0.577
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381