Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   HEQ83_RS17465 Genome accession   NZ_CP051011
Coordinates   3558376..3558495 (+) Length   39 a.a.
NCBI ID   WP_069473622.1    Uniprot ID   -
Organism   Bacillus velezensis strain BY6     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3553376..3563495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEQ83_RS17445 - 3553726..3554238 (+) 513 Protein_3393 bacteriocin biosynthesis protein AlbG -
  HEQ83_RS17450 - 3554245..3555621 (-) 1377 WP_069473620.1 YncE family protein -
  HEQ83_RS17455 - 3555661..3557016 (-) 1356 WP_069473621.1 YncE family protein -
  HEQ83_RS17460 rapF 3557247..3558392 (+) 1146 WP_079890910.1 tetratricopeptide repeat protein Regulator
  HEQ83_RS17465 phrF 3558376..3558495 (+) 120 WP_069473622.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  HEQ83_RS17470 - 3558694..3558897 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  HEQ83_RS17475 - 3558911..3559114 (+) 204 WP_069473623.1 hypothetical protein -
  HEQ83_RS17485 - 3559523..3559804 (+) 282 WP_014306021.1 hypothetical protein -
  HEQ83_RS17490 - 3559848..3560360 (+) 513 WP_069473625.1 stage II sporulation protein M -
  HEQ83_RS17500 - 3560951..3561169 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  HEQ83_RS17505 speB 3561339..3562211 (-) 873 WP_003151054.1 agmatinase -
  HEQ83_RS17510 speE 3562271..3563101 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4282.10 Da        Isoelectric Point: 8.0195

>NTDB_id=436043 HEQ83_RS17465 WP_069473622.1 3558376..3558495(+) (phrF) [Bacillus velezensis strain BY6]
MKLKYKLALTCLAVSTVFVSADIASAPEHQFEIAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=436043 HEQ83_RS17465 WP_069473622.1 3558376..3558495(+) (phrF) [Bacillus velezensis strain BY6]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAGTAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAATTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

70.37

69.231

0.487
  phrC Bacillus subtilis subsp. subtilis str. 168

43.59

100

0.436