Detailed information NTG0436042

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: HEQ83_RS17460
• Genome accession: NZ_CP051011
• Coordinates: 3557247..3558392 (+)
• Length: 381 a.a.
• NCBI ID: WP_079890910.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain BY6
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3552247..3563392

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HEQ83_RS17440	-	3553144..3553572 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
HEQ83_RS17445	-	3553726..3554238 (+)	513	Protein_3393	bacteriocin biosynthesis protein AlbG	-
HEQ83_RS17450	-	3554245..3555621 (-)	1377	WP_069473620.1	YncE family protein	-
HEQ83_RS17455	-	3555661..3557016 (-)	1356	WP_069473621.1	YncE family protein	-
HEQ83_RS17460	rapF	3557247..3558392 (+)	1146	WP_079890910.1	tetratricopeptide repeat protein	Regulator
HEQ83_RS17465	phrF	3558376..3558495 (+)	120	WP_069473622.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
HEQ83_RS17470	-	3558694..3558897 (+)	204	WP_003151064.1	helix-turn-helix transcriptional regulator	-
HEQ83_RS17475	-	3558911..3559114 (+)	204	WP_069473623.1	hypothetical protein	-
HEQ83_RS17485	-	3559523..3559804 (+)	282	WP_014306021.1	hypothetical protein	-
HEQ83_RS17490	-	3559848..3560360 (+)	513	WP_069473625.1	stage II sporulation protein M	-
HEQ83_RS17500	-	3560951..3561169 (-)	219	WP_003151056.1	helix-turn-helix transcriptional regulator	-
HEQ83_RS17505	speB	3561339..3562211 (-)	873	WP_003151054.1	agmatinase	-
HEQ83_RS17510	speE	3562271..3563101 (-)	831	WP_003151052.1	spermidine synthase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45571.68 Da
• Isoelectric Point: 4.5378

>NTDB_id=436042 HEQ83_RS17460 WP_079890910.1 3557247..3558392(+) (rapF) [Bacillus velezensis strain BY6]
MASVLSSSAIGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQGNYKP
AIDYIKQAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVDEPDEEAI
MECFDFLRDKMMYADLEDFALDVAKYYHERENFEKAAAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=436042 HEQ83_RS17460 WP_079890910.1 3557247..3558392(+) (rapF) [Bacillus velezensis strain BY6]
GTGGCGAGTGTTTTATCGTCTTCAGCGATTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTTGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTGGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGGAAATTACAAACCA
GCCATTGATTACATAAAACAGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAATATGAATTTTTAGAATCTTTGTATGTCGATGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAAATGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAGAATTTCGAGAAGGCTGCTGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	78.478	100	0.785
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57