Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   HEQ83_RS14560 Genome accession   NZ_CP051011
Coordinates   2988202..2988846 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain BY6     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2983202..2993846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEQ83_RS14525 - 2984387..2984818 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  HEQ83_RS14530 - 2984818..2985159 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  HEQ83_RS14535 - 2985152..2986633 (+) 1482 WP_168237160.1 Na+/H+ antiporter subunit D -
  HEQ83_RS14540 - 2986639..2987115 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  HEQ83_RS14545 - 2987115..2987399 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  HEQ83_RS14550 mnhG 2987383..2987757 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  HEQ83_RS14555 - 2987797..2988180 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  HEQ83_RS14560 comA 2988202..2988846 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  HEQ83_RS14565 comP 2988927..2991221 (-) 2295 WP_165625758.1 sensor histidine kinase Regulator
  HEQ83_RS14575 comQ 2991374..2992306 (-) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  HEQ83_RS14580 degQ 2992491..2992631 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  HEQ83_RS14585 - 2993097..2993438 (+) 342 WP_003152040.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=436029 HEQ83_RS14560 WP_003152052.1 2988202..2988846(-) (comA) [Bacillus velezensis strain BY6]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=436029 HEQ83_RS14560 WP_003152052.1 2988202..2988846(-) (comA) [Bacillus velezensis strain BY6]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGGACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864