Detailed information NTG0435971

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: IL989_RS12520
• Genome accession: NZ_CP062984
• Coordinates: 2557182..2557787 (-)
• Length: 201 a.a.
• NCBI ID: WP_003152683.1
• Uniprot ID: A7Z769
• Organism: Bacillus amyloliquefaciens strain PP19 isolate PP19
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2552182..2562787

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IL989_RS12485 (IL989_12485)	-	2552193..2552849 (-)	657	WP_013353038.1	DUF421 domain-containing protein	-
IL989_RS12490 (IL989_12490)	-	2553016..2553402 (+)	387	WP_013353039.1	TIGR04086 family membrane protein	-
IL989_RS12495 (IL989_12495)	yajC	2553455..2553715 (-)	261	WP_003152695.1	preprotein translocase subunit YajC	-
IL989_RS12500 (IL989_12500)	tgt	2553747..2554892 (-)	1146	WP_014472142.1	tRNA guanosine(34) transglycosylase Tgt	-
IL989_RS12505 (IL989_12505)	queA	2554920..2555948 (-)	1029	WP_065522675.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
IL989_RS12510 (IL989_12510)	-	2555974..2556174 (-)	201	WP_013353042.1	DUF2905 domain-containing protein	-
IL989_RS12515 (IL989_12515)	ruvB	2556167..2557171 (-)	1005	WP_013353043.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
IL989_RS12520 (IL989_12520)	ruvA	2557182..2557787 (-)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
IL989_RS12525 (IL989_12525)	-	2557922..2558398 (-)	477	WP_038463270.1	intercompartmental signaling factor BofC	-
IL989_RS19370	-	2558564..2558683 (-)	120	WP_014470775.1	hypothetical protein	-
IL989_RS12530 (IL989_12530)	-	2558808..2559401 (-)	594	WP_014470776.1	YhcN/YlaJ family sporulation lipoprotein	-
IL989_RS12535 (IL989_12535)	safA	2559550..2560701 (-)	1152	WP_013353047.1	spore coat assembly protein SafA	-
IL989_RS12540 (IL989_12540)	nadA	2560828..2561931 (-)	1104	WP_013353048.1	quinolinate synthase NadA	-
IL989_RS12545 (IL989_12545)	nadC	2561931..2562779 (-)	849	WP_193350495.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22414.85 Da
• Isoelectric Point: 5.1597

>NTDB_id=435971 IL989_RS12520 WP_003152683.1 2557182..2557787(-) (ruvA) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL
EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=435971 IL989_RS12520 WP_003152683.1 2557182..2557787(-) (ruvA) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
GTGATTGAATTCGTGAAGGGGACGATTGATTACGTATCGCCCCAATACATCGTGATTGAAAACGGCGGGATCGGCTATCA
GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGACG
CCTTTTCTTTGTATGGCTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAATGTCACCGGCATCGGTCCG
AAAGGGGCGCTCGCCATTCTCGGTTCCGGTGATCCGGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT
GGTGAAATTTCCTGGTGTGGGCAAAAAAACGGCACGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGATGTCGTGC
CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGATGAGGCGCTT
GAAGCGCTCAGGGTACTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC
AACAGACCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: A7Z769

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408