Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IMO23_RS02975 Genome accession   NZ_CP062919
Coordinates   631251..631661 (+) Length   136 a.a.
NCBI ID   WP_002017231.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 626251..636661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMO23_RS02960 (IMO23_02960) - 627240..629546 (+) 2307 WP_000259108.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  IMO23_RS02965 (IMO23_02965) - 629591..630364 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  IMO23_RS02970 (IMO23_02970) mazG 630476..631282 (+) 807 WP_000359497.1 nucleoside triphosphate pyrophosphohydrolase -
  IMO23_RS02975 (IMO23_02975) comEA 631251..631661 (+) 411 WP_002017231.1 ComEA family DNA-binding protein Machinery gene
  IMO23_RS02980 (IMO23_02980) pcnB 631786..633249 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  IMO23_RS02985 (IMO23_02985) folK 633246..633728 (+) 483 WP_000219216.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  IMO23_RS02990 (IMO23_02990) panB 633774..634583 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  IMO23_RS02995 (IMO23_02995) panC 634587..635435 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  IMO23_RS03000 (IMO23_03000) rapZ 635458..636309 (+) 852 WP_109428928.1 RNase adapter RapZ -
  IMO23_RS03005 (IMO23_03005) - 636306..636575 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15654.89 Da        Isoelectric Point: 10.3828

>NTDB_id=435810 IMO23_RS02975 WP_002017231.1 631251..631661(+) (comEA) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=435810 IMO23_RS02975 WP_002017231.1 631251..631661(+) (comEA) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.794

100

0.978
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412