Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   A3L25_RS07710 Genome accession   NZ_CP050951
Coordinates   1706163..1708376 (+) Length   737 a.a.
NCBI ID   WP_063424965.1    Uniprot ID   A0AAP9MY61
Organism   Pseudomonas putida strain JQ581     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1701163..1713376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3L25_RS07690 (A3L25_007705) - 1703034..1703657 (+) 624 WP_063424961.1 glutathione S-transferase -
  A3L25_RS07695 (A3L25_007710) - 1703790..1704722 (+) 933 WP_016500911.1 ABC transporter ATP-binding protein -
  A3L25_RS07700 (A3L25_007715) - 1704719..1705498 (+) 780 WP_063424963.1 ABC transporter permease -
  A3L25_RS07705 (A3L25_007720) - 1705382..1706020 (-) 639 WP_155737846.1 DUF2062 domain-containing protein -
  A3L25_RS07710 (A3L25_007725) comA 1706163..1708376 (+) 2214 WP_063424965.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A3L25_RS07715 (A3L25_007730) exbB 1708890..1709525 (+) 636 WP_016500907.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  A3L25_RS07720 (A3L25_007735) - 1709522..1709956 (+) 435 WP_016500906.1 biopolymer transporter ExbD -
  A3L25_RS07725 (A3L25_007740) lpxK 1709956..1710957 (+) 1002 WP_063424967.1 tetraacyldisaccharide 4'-kinase -
  A3L25_RS07730 (A3L25_007745) - 1711002..1711187 (+) 186 WP_003247142.1 Trm112 family protein -
  A3L25_RS07735 (A3L25_007750) kdsB 1711184..1711948 (+) 765 WP_063424969.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A3L25_RS07740 (A3L25_007755) - 1711948..1712412 (+) 465 WP_063424971.1 low molecular weight protein-tyrosine-phosphatase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79447.22 Da        Isoelectric Point: 10.5441

>NTDB_id=435747 A3L25_RS07710 WP_063424965.1 1706163..1708376(+) (comA) [Pseudomonas putida strain JQ581]
MRTGMFALALGLLCLGFLPVLPSVGWLLALAACAVVTLFTRVWPLGCFLLGLCWACWSAQQALDDRLAAGLDGRTLWLEG
RVVGLPARTAQGVRFELEAARSRRAELPQRLQLSWFEGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVTGGWRDVLRQRLLAVEANGRQAALVALVLGDGTGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGATLPLLLALVAVLLVEPL
AALLPGFWLSFTAVATLVYCFSGRLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSVAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDGLFRLLALVAQQRPAWVAPALPLGAWLLVSLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPHGQVEVWQLDVGQGLAVLLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGSLDTMVISHAHADHAGGAS
AIQRGLPVRRLIGGEALEEVPLQPCASGEQWDWDGVRFSLWRWAAGQSSNDRSCVLLVEAQGERLLLAGDMEAAAERAWL
ADHETPRIDWLQSPHHGSRSSSTEAFIRATAPRGVLISRGRNNSFGHPHVQVMERYQRHGLAVHDTAVEGALRLVLGRQG
EVEGMRGQRRFWRVRAE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=435747 A3L25_RS07710 WP_063424965.1 1706163..1708376(+) (comA) [Pseudomonas putida strain JQ581]
ATGCGCACAGGGATGTTCGCGCTCGCGCTTGGGCTGCTGTGCCTGGGCTTTCTCCCCGTATTGCCATCGGTCGGATGGCT
GCTGGCGCTTGCTGCGTGCGCTGTCGTCACTCTGTTTACCCGCGTTTGGCCGTTGGGCTGCTTTTTGCTGGGCCTGTGTT
GGGCATGTTGGTCTGCTCAGCAGGCCCTGGATGATCGCCTGGCCGCTGGCCTGGATGGCCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGTTTGCCGGCCCGCACGGCGCAAGGCGTGCGCTTTGAGCTGGAGGCGGCACGCTCGCGGCGGGCCGAACT
GCCGCAACGGTTGCAACTGAGCTGGTTCGAAGGGCCGCCGCTGCGGGCCGGTGAGCAGTGGCGGCTGGCCGTGACCTTGC
AGCGCCCCGCCGGGCTGCTCAACCCACATGGGCCGGACCGTGAGGCGCAGCTGCTGGCGCGGCGGGTGGGCGCCACCGGT
ACGGTAAAGGCCGGGCAGCTGCTGGCGCCGGTAACCGGTGGCTGGCGCGATGTGCTGCGTCAGCGTTTGCTGGCGGTCGA
AGCCAATGGCCGGCAGGCCGCGTTGGTGGCGCTGGTGCTTGGCGACGGCACAGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAAGCCACCGGCACGGTGCACCTGTTGGTGATCTCTGGCCAGCATATCGGCCTGGTGGCCGGTTTGCTGTACGGCCTG
GTCGCCGGACTGGCGCGTTGGGGCCTGTGGCCCGCTCGGTTACCGTGGCTGCCCTGGGCGTGTGGCCTGGCCATGGCGGC
GGCGCTGGCCTACGGCTGGCTGGCCGGTGCCGGTGTGCCGGTGCAGCGTGCCTGCCTGATGCTGGCGGTGGTGCTGCTCT
GGCGCCTGCGCTTTCGCCATCTCGGTGCGACGCTGCCGCTATTGCTGGCGCTGGTCGCGGTGCTGCTGGTCGAACCACTG
GCAGCGCTGCTGCCTGGGTTCTGGCTGTCATTTACGGCCGTGGCCACGCTTGTCTATTGCTTCAGTGGCCGGCTAGGGGG
CTGGCGGCCCTGGCAGGCCTGGACACGCGCGCAATGGGTGATCGCCATCGGCCTGCTGCCGGTGTTGCTGGCCACGGGCT
TGCCGGTGAGCCTGAGTGCGCCGCTGGCCAATCTTGTCGCAGTGCCTTGGGTGAGCGTGGCGGTGCTGCCTTTGGCACTG
CTGGGTACGTTGCTGCTGCCACTGGGCGGGGTAGGGGAGGCGTTGCTATGGCTGGCGGGTGGCCTGCTGGATGGGCTGTT
CCGGCTGCTGGCGCTGGTGGCGCAGCAGCGCCCGGCATGGGTGGCGCCGGCCCTGCCATTAGGGGCCTGGCTATTGGTGA
GCCTGGGCGCTCTGTTGGTTTTGCTGCCCCGTGGTGTGCCGCTGCGCGGGTTGGGCGGGGTGATGCTGCTGGCCTTGTGG
GTGCCCAGAGAACCGGTACCGCACGGGCAGGTCGAGGTCTGGCAACTGGACGTTGGCCAAGGGCTGGCGGTGCTGTTGCG
CACCCGACATCACAGCCTGCTGTACGACGCCGGGCCGGCCAGAGGCGAAAGCGACCTGGGGGAGCGGGTGGTGTTACCGA
CGTTGCGCAAGCTGGGGGTGGGCAGCCTGGACACGATGGTGATCAGCCACGCGCATGCCGACCATGCGGGTGGTGCCTCG
GCCATACAGCGTGGTCTGCCGGTCAGGCGGCTGATCGGCGGGGAAGCGCTGGAAGAAGTCCCATTGCAGCCTTGTGCCAG
TGGCGAACAATGGGACTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGCGGCCGGGCAGAGCAGCAATGACCGATCCT
GTGTGCTGTTGGTAGAGGCGCAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGCTGCTGCCGAACGGGCTTGGCTG
GCGGACCATGAAACGCCGCGTATCGACTGGTTGCAGTCACCGCACCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCAT
CCGGGCTACTGCGCCGCGTGGGGTATTGATTTCGCGAGGGCGCAACAACAGCTTCGGGCACCCGCATGTTCAGGTGATGG
AGCGTTATCAGCGGCATGGGCTGGCGGTGCATGACACGGCGGTGGAGGGGGCGTTGCGGTTGGTGTTGGGGCGGCAGGGA
GAGGTTGAGGGTATGAGGGGGCAGCGGCGGTTTTGGCGGGTTCGAGCGGAGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.917

97.829

0.586
  comA Ralstonia pseudosolanacearum GMI1000

35.077

100

0.373