Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   A3L25_RS07715 Genome accession   NZ_CP050951
Coordinates   1708890..1709525 (+) Length   211 a.a.
NCBI ID   WP_016500907.1    Uniprot ID   A0AAP1T5P6
Organism   Pseudomonas putida strain JQ581     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1703890..1714525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3L25_RS07700 (A3L25_007715) - 1704719..1705498 (+) 780 WP_063424963.1 ABC transporter permease -
  A3L25_RS07705 (A3L25_007720) - 1705382..1706020 (-) 639 WP_155737846.1 DUF2062 domain-containing protein -
  A3L25_RS07710 (A3L25_007725) comA 1706163..1708376 (+) 2214 WP_063424965.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A3L25_RS07715 (A3L25_007730) exbB 1708890..1709525 (+) 636 WP_016500907.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  A3L25_RS07720 (A3L25_007735) - 1709522..1709956 (+) 435 WP_016500906.1 biopolymer transporter ExbD -
  A3L25_RS07725 (A3L25_007740) lpxK 1709956..1710957 (+) 1002 WP_063424967.1 tetraacyldisaccharide 4'-kinase -
  A3L25_RS07730 (A3L25_007745) - 1711002..1711187 (+) 186 WP_003247142.1 Trm112 family protein -
  A3L25_RS07735 (A3L25_007750) kdsB 1711184..1711948 (+) 765 WP_063424969.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A3L25_RS07740 (A3L25_007755) - 1711948..1712412 (+) 465 WP_063424971.1 low molecular weight protein-tyrosine-phosphatase -
  A3L25_RS07745 (A3L25_007760) murB 1712409..1713428 (+) 1020 WP_063424973.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22874.14 Da        Isoelectric Point: 7.3616

>NTDB_id=435748 A3L25_RS07715 WP_016500907.1 1708890..1709525(+) (exbB) [Pseudomonas putida strain JQ581]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMNANASVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=435748 A3L25_RS07715 WP_016500907.1 1708890..1709525(+) (exbB) [Pseudomonas putida strain JQ581]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCATTGGGCGAAATCCTTGCCGCGGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATTCACGAACTGGAGCGCTACAT
CAGCACGCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGAATGCCAATGCGTCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAGGCAATCAAGCTGGTGGAAGTGATCCAGGGCGACCGGGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829