Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   HFD83_RS01670 Genome accession   NZ_CP050916
Coordinates   351763..355617 (+) Length   1284 a.a.
NCBI ID   WP_000768970.1    Uniprot ID   A0A7H2A3V4
Organism   Acinetobacter baumannii strain DT-Ab003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346763..360617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFD83_RS01640 (HFD83_01640) gmk 347035..347664 (-) 630 WP_000015937.1 guanylate kinase -
  HFD83_RS01645 (HFD83_01645) ispH 347787..348737 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HFD83_RS01650 (HFD83_01650) fimU 348907..349380 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HFD83_RS01655 (HFD83_01655) pilV 349374..349934 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  HFD83_RS01660 (HFD83_01660) pilW 349935..350936 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  HFD83_RS01665 (HFD83_01665) pilX 350933..351751 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HFD83_RS01670 (HFD83_01670) pilY1 351763..355617 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  HFD83_RS01675 (HFD83_01675) - 355630..356111 (+) 482 Protein_320 type IV pilin protein -
  HFD83_RS01680 (HFD83_01680) pilE 356108..356533 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  HFD83_RS01685 (HFD83_01685) rpsP 356680..356931 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  HFD83_RS01690 (HFD83_01690) rimM 356951..357499 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  HFD83_RS01695 (HFD83_01695) trmD 357545..358285 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HFD83_RS01700 (HFD83_01700) rplS 358494..358862 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  HFD83_RS01705 (HFD83_01705) - 358915..359856 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -

Sequence

Protein


Download         Length: 1284 a.a.        Molecular weight: 138259.74 Da        Isoelectric Point: 7.7712

>NTDB_id=435601 HFD83_RS01670 WP_000768970.1 351763..355617(+) (pilY1) [Acinetobacter baumannii strain DT-Ab003]
MKLKLKNFKPNNLWYAVYSSSMIFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTNNSYGENRLAMLKNGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQILVAAAPLGDASTLNTVGSQRYKLKQAVANLTAGGSTPSAHAYAEAAAYLM
GTTTYSETNYAIRKDSYIKRVRRSDNRTEYSYCTNYRDSQIDTANLWQPCRSNSYWSSWSTNNPGVDNATAYDTSSDWTY
YYTYYYTTFNYAVANADSGIPKSKSNDTASNPNIVVDRNATNSNAVYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTNTR
SASVMSTALGSTFGADFNCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLS
SRTQSDRKGDDACSPNQSTNAVAAPGYGNGGFFPTQSSQGVTDSVIAFINNLDKVPLEPLTTGAISVPYDALNPKNLQEY
GYLRAFEPNPANTYLTWRGNLKKYHVVLSGANAGTFEANTGGLVYNATGAFRTGTKDYWNSSTYNDGGKVFFGGSYAKVP
LPIAGQPETRDEEGNITKYYYAVQTKIRNLFTDVSAVASDGSLTKISTSGTNLLKIPAAPPEGTNPFDTVANTASYVLGK
FDPSTGQNILKAFPISLKLKILNYLGYSTDINATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDDNGNLTSAREQS
ILYGTMEGGLHIVDASSGIEQMVFVPADILNDSVASKALVVGQSDASAPAHGMDGAWVSDPAYNITTVGSGSSAVSKVTA
KQMNIYGGMRMGGSSYYGLDVLSPTSPKLLFRIGADQTDYSRMGQSWSKPVLANIRYNGSIRRVLIVGGGYDQCYEKPNI
TLTDACFTNGKAKGNAVYIIDAKTGQRLWWTSDTGSNTDNANMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRVDLN
NNQTKTNSTYSSFGVRVVRLANLATNDSTYDGTNDYTGGNAPRFYEPPTVTIHDYGIHTFITLGIASGDRSTPLDVYPLT
GREGMTPASALSGRPVNNVYGIIDRDFVKKNLMSLTDNQLETKDITRTGLRKNPQILRTGETRVAQIFFPTTGVGKGGWY
RSLSSTSDGTEKANNSFRIKGGLKAFEEPMAITGNLIIPVYDPQGTGIVAADPCLPRVVGETDRQTYCLPFGACLNPDGT
INSNKENPSGFQTKTGSNCPAGVSECNTNVIGAGIRNITFVPKRDEPPVTNSCGKLQLSGNENGTGEWQCTSHLLPVRWY
ERYR

Nucleotide


Download         Length: 3855 bp        

>NTDB_id=435601 HFD83_RS01670 WP_000768970.1 351763..355617(+) (pilY1) [Acinetobacter baumannii strain DT-Ab003]
ATGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTGTGGTATGCCGTCTATTCAAGCTCAATGATATTCACATGGCT
AATGACAAGCTCTGTGGTGCAAGCAAGTGATTTACAAATTTATGCCTCACCTACAGCAGGTAAAAAAACAATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAACAATAGTTATGGTGAAAACCGCTTAGCCATGCTTAAAAATGGTATGAATGCT
TTTTTGGCTAGCAATAACCCTGTCTTAAATGATACGCGAGTAGGTTTAGGAAATTTCTCGGCAAATGGTGATAGCCGAAG
TGGACAAATTTTAGTGGCTGCTGCTCCTTTAGGTGATGCAAGTACTTTAAATACGGTAGGCTCACAACGTTATAAATTAA
AACAAGCTGTTGCTAATTTAACTGCGGGAGGCTCAACACCTTCAGCCCACGCTTATGCTGAAGCAGCTGCTTACTTAATG
GGGACAACCACATATTCAGAGACGAATTATGCTATTCGTAAAGATAGTTATATCAAACGTGTAAGAAGATCTGATAATAG
AACTGAATATTCATATTGTACTAATTACCGTGATTCGCAAATTGATACAGCCAACCTATGGCAACCTTGTCGTTCAAATA
GTTATTGGAGTAGCTGGTCAACAAATAATCCAGGTGTGGATAATGCTACTGCTTATGATACTTCATCTGACTGGACTTAT
TACTATACTTATTACTACACCACTTTTAATTATGCTGTAGCAAATGCAGATAGCGGTATTCCAAAATCTAAATCAAACGA
TACAGCTAGCAATCCGAATATTGTTGTAGACCGAAATGCTACTAACTCCAATGCAGTGTATCAGTCACCTTTACCTGCAG
TAGCGAATCGCCAGAGTTGTGATGGGCAAGGTATTTACTTCTTATCGGATGGCGAACCGAACAATACAACAAATACACGT
TCGGCAAGTGTCATGTCGACTGCTTTAGGTAGTACTTTTGGAGCTGATTTTAATTGTTCTGGAGGTTTATCTAACACTAC
GGCAGACTCTGGTTGGGCTTGTATGGGGGAGTTTGCAAAAAGATTATTTGATAAAACAAAGAACCCTGCCGGAGTTTCTA
TTCAAACAGCATTTGTCGGTTTTGGTAGTGACTTTTCTAGTTTGAGTTCTTCTGATGTAAAAAATGCCTGCCGTTTAAGT
TCGAGAACCCAGTCTGACCGAAAAGGAGATGATGCGTGTTCACCGAATCAATCTACAAATGCGGTAGCTGCACCAGGTTA
TGGGAATGGTGGTTTTTTCCCTACTCAGAGTTCACAAGGCGTAACAGACAGCGTTATCGCATTTATTAATAATTTAGATA
AAGTTCCTTTAGAACCCTTAACCACAGGTGCTATCTCAGTTCCATATGATGCATTGAATCCCAAAAATTTACAGGAATAT
GGTTATTTACGAGCTTTTGAGCCAAATCCAGCTAACACGTACTTAACATGGCGTGGAAATTTAAAGAAATATCATGTTGT
TTTATCTGGAGCGAATGCAGGTACTTTTGAAGCTAATACTGGTGGGTTGGTTTACAACGCAACTGGGGCATTTAGAACGG
GTACAAAAGATTATTGGAATAGCTCTACTTATAATGATGGAGGTAAAGTCTTTTTTGGTGGTTCATATGCAAAAGTTCCT
TTACCCATTGCTGGACAACCTGAAACACGTGATGAAGAAGGAAATATCACAAAATATTATTACGCAGTACAAACTAAAAT
CCGCAACTTATTTACTGATGTTTCCGCCGTCGCATCAGATGGTAGCTTAACGAAAATTTCAACTTCTGGAACTAATTTGC
TAAAAATTCCAGCTGCTCCACCAGAAGGAACTAATCCTTTTGATACGGTGGCTAATACAGCAAGTTATGTTTTAGGTAAA
TTTGATCCATCAACTGGACAAAATATTTTAAAAGCTTTTCCTATAAGCTTGAAATTAAAAATATTAAATTATTTAGGTTA
TTCAACAGATATTAATGCAACAACTCTGCCTTCATCTTTGGTTACATCGAATGAACCTTATTTATCGATGGGGGGAAGTA
TTCACTCTTTACCGGTTCAACTAACCTACAATGGAACACTAGATGATAATGGGAATTTAACATCTGCCCGAGAACAATCC
ATCCTCTATGGAACTATGGAAGGCGGATTACATATTGTGGATGCTTCATCTGGTATTGAGCAAATGGTCTTTGTTCCTGC
AGATATTTTAAATGATTCAGTTGCTTCCAAAGCTTTAGTTGTTGGTCAAAGTGATGCTTCAGCTCCCGCTCATGGTATGG
ACGGAGCTTGGGTATCTGATCCAGCCTATAATATTACTACAGTGGGAAGTGGTAGCTCGGCAGTATCAAAAGTAACTGCA
AAGCAAATGAATATTTATGGCGGCATGCGTATGGGAGGAAGTAGCTACTACGGACTAGATGTATTAAGCCCTACTTCACC
GAAACTGCTTTTTAGAATAGGGGCAGACCAGACTGACTATAGCCGTATGGGTCAAAGCTGGTCTAAACCCGTACTCGCGA
ACATCCGTTATAACGGTTCTATTAGACGCGTCCTGATTGTTGGCGGTGGTTATGATCAGTGTTATGAAAAACCAAATATT
ACGTTGACTGACGCTTGCTTTACCAATGGAAAAGCAAAAGGAAATGCTGTCTATATTATTGACGCAAAAACTGGTCAGCG
TTTGTGGTGGACAAGTGATACAGGTTCTAATACTGATAACGCCAATATGAAGCATAGTATTGTTAGCCGTATTAGTACTT
TAGACCGTGATGCTGATGGCTTAGTCGACCATCTATATTTTGGAGATTTAGGCGGACAAATTTTTCGCGTGGACCTTAAT
AATAATCAGACAAAAACCAATTCGACCTATAGCAGTTTTGGTGTCAGAGTTGTGCGTTTAGCGAATTTAGCAACAAATGA
TTCAACTTATGATGGCACAAATGATTATACAGGTGGGAATGCTCCTCGTTTTTATGAGCCTCCAACAGTAACGATCCACG
ATTATGGAATTCACACTTTTATTACATTAGGAATTGCATCAGGAGACCGTAGTACACCTTTAGATGTTTACCCACTCACA
GGTCGTGAAGGTATGACGCCTGCAAGTGCATTAAGTGGACGTCCTGTAAATAATGTATATGGAATTATTGATAGAGACTT
TGTTAAAAAGAACTTAATGTCTTTAACTGATAATCAGCTTGAAACAAAAGACATTACACGGACAGGCTTAAGAAAAAATC
CACAAATTCTAAGAACAGGTGAAACAAGAGTAGCACAAATTTTCTTCCCCACTACAGGAGTAGGTAAAGGTGGTTGGTAT
CGCTCGCTTTCTAGTACGAGTGATGGTACAGAAAAAGCTAATAATAGTTTTCGTATTAAAGGAGGACTCAAAGCTTTTGA
AGAACCAATGGCAATTACGGGTAATTTAATTATTCCAGTTTATGACCCTCAAGGAACGGGAATTGTTGCGGCAGATCCTT
GTCTACCTCGTGTTGTGGGAGAAACAGACCGACAAACTTATTGTTTACCATTTGGTGCTTGTCTTAATCCGGATGGAACC
ATTAATTCAAATAAAGAAAACCCGAGCGGGTTTCAAACAAAAACTGGTAGTAACTGTCCAGCTGGAGTCTCTGAATGTAA
TACAAATGTCATTGGTGCAGGTATTCGTAATATCACATTTGTTCCAAAAAGAGATGAACCTCCTGTGACTAATAGTTGTG
GGAAATTACAGCTGTCTGGAAACGAGAACGGAACAGGTGAGTGGCAATGTACAAGTCATTTACTTCCTGTGCGCTGGTAT
GAGCGCTATCGCTAG

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(715-964)

von Willebrand factor type A domain (VWA_2)

(51-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

88.527

100

0.889