Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IMP37_RS13940 Genome accession   NZ_CP062901
Coordinates   2889157..2889786 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli O152:H23 strain Res13-Lact-ER01-35     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2884157..2894786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMP37_RS13925 (IMP37_13925) helD 2884399..2886453 (-) 2055 WP_000420536.1 DNA helicase IV -
  IMP37_RS13930 (IMP37_13930) yccF 2886576..2887022 (+) 447 WP_001261235.1 YccF domain-containing protein -
  IMP37_RS13935 (IMP37_13935) yccS 2887032..2889194 (+) 2163 WP_000875019.1 YccS family putative transporter -
  IMP37_RS13940 (IMP37_13940) sxy/tfoX 2889157..2889786 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IMP37_RS13945 (IMP37_13945) sulA 2890005..2890514 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  IMP37_RS13950 (IMP37_13950) ompA 2890871..2891923 (+) 1053 WP_072833035.1 porin OmpA -
  IMP37_RS13955 (IMP37_13955) matP 2891998..2892450 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  IMP37_RS13960 (IMP37_13960) ycbZ 2892636..2894396 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=435599 IMP37_RS13940 WP_000839153.1 2889157..2889786(-) (sxy/tfoX) [Escherichia coli O152:H23 strain Res13-Lact-ER01-35]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=435599 IMP37_RS13940 WP_000839153.1 2889157..2889786(-) (sxy/tfoX) [Escherichia coli O152:H23 strain Res13-Lact-ER01-35]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1