Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   HFD83_RS01680 Genome accession   NZ_CP050916
Coordinates   356108..356533 (+) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain DT-Ab003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351108..361533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFD83_RS01670 (HFD83_01670) pilY1 351763..355617 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  HFD83_RS01675 (HFD83_01675) - 355630..356111 (+) 482 Protein_320 type IV pilin protein -
  HFD83_RS01680 (HFD83_01680) pilE 356108..356533 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  HFD83_RS01685 (HFD83_01685) rpsP 356680..356931 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  HFD83_RS01690 (HFD83_01690) rimM 356951..357499 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  HFD83_RS01695 (HFD83_01695) trmD 357545..358285 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HFD83_RS01700 (HFD83_01700) rplS 358494..358862 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  HFD83_RS01705 (HFD83_01705) - 358915..359856 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  HFD83_RS01710 (HFD83_01710) - 359971..361005 (-) 1035 WP_001189447.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=435602 HFD83_RS01680 WP_000788342.1 356108..356533(+) (pilE) [Acinetobacter baumannii strain DT-Ab003]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=435602 HFD83_RS01680 WP_000788342.1 356108..356533(+) (pilE) [Acinetobacter baumannii strain DT-Ab003]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518