Detailed information NTG0435568

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: HFD82_RS09360
• Genome accession: NZ_CP050914
• Coordinates: 1950443..1951144 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594589.1
• Uniprot ID: A0A9P3CZ31
• Organism: Acinetobacter baumannii strain DT-Ab007
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1945443..1956144

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HFD82_RS09325 (HFD82_09325)	kdsB	1945966..1946727 (+)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HFD82_RS09330 (HFD82_09330)	-	1946739..1947719 (+)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
HFD82_RS09335 (HFD82_09335)	-	1947731..1948072 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
HFD82_RS09340 (HFD82_09340)	-	1948090..1948863 (+)	774	WP_000497298.1	TatD family hydrolase	-
HFD82_RS09345 (HFD82_09345)	-	1948901..1949509 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
HFD82_RS09350 (HFD82_09350)	-	1949519..1950073 (+)	555	WP_000841373.1	type II secretion system protein	-
HFD82_RS09355 (HFD82_09355)	xcpV	1950063..1950443 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
HFD82_RS09360 (HFD82_09360)	xcpW	1950443..1951144 (+)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
HFD82_RS09365 (HFD82_09365)	gspK	1951144..1952103 (+)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
HFD82_RS09370 (HFD82_09370)	-	1952334..1952930 (+)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
HFD82_RS09375 (HFD82_09375)	ung	1952981..1953694 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
HFD82_RS09380 (HFD82_09380)	-	1953691..1954815 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
HFD82_RS09385 (HFD82_09385)	tadA	1954822..1955325 (+)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
HFD82_RS09390 (HFD82_09390)	-	1955395..1955838 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26639.58 Da
• Isoelectric Point: 9.3468

>NTDB_id=435568 HFD82_RS09360 WP_000594589.1 1950443..1951144(+) (xcpW) [Acinetobacter baumannii strain DT-Ab007]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=435568 HFD82_RS09360 WP_000594589.1 1950443..1951144(+) (xcpW) [Acinetobacter baumannii strain DT-Ab007]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996