Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   HFD82_RS04575 Genome accession   NZ_CP050914
Coordinates   951140..953572 (+) Length   810 a.a.
NCBI ID   WP_000472705.1    Uniprot ID   A0A231SZ39
Organism   Acinetobacter baumannii strain DT-Ab007     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 946110..965475 951140..953572 within 0


Gene organization within MGE regions


Location: 946110..965475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFD82_RS04545 (HFD82_04545) - 946110..946256 (-) 147 WP_000691794.1 hypothetical protein -
  HFD82_RS04550 (HFD82_04550) - 946290..947231 (-) 942 WP_000795874.1 hypothetical protein -
  HFD82_RS04555 (HFD82_04555) - 947488..947973 (+) 486 WP_001985538.1 YaiI/YqxD family protein -
  HFD82_RS04560 (HFD82_04560) - 947984..948892 (+) 909 WP_001140078.1 DMT family transporter -
  HFD82_RS04565 (HFD82_04565) - 949140..950375 (+) 1236 WP_001984636.1 lipoprotein-releasing ABC transporter permease subunit -
  HFD82_RS04570 (HFD82_04570) lolD 950368..951054 (+) 687 WP_000049403.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  HFD82_RS04575 (HFD82_04575) comA/comEC 951140..953572 (+) 2433 WP_000472705.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HFD82_RS04580 (HFD82_04580) - 953525..954508 (-) 984 WP_001984639.1 lysophospholipid acyltransferase family protein -
  HFD82_RS04585 (HFD82_04585) sppA 954645..955661 (+) 1017 WP_001286615.1 signal peptide peptidase SppA -
  HFD82_RS04590 (HFD82_04590) - 955680..956489 (+) 810 WP_000114076.1 alpha/beta fold hydrolase -
  HFD82_RS04595 (HFD82_04595) purN 956553..957182 (-) 630 WP_000975536.1 phosphoribosylglycinamide formyltransferase -
  HFD82_RS04600 (HFD82_04600) purM 957179..958249 (-) 1071 WP_000071984.1 phosphoribosylformylglycinamidine cyclo-ligase -
  HFD82_RS04605 (HFD82_04605) cxpE 958385..959578 (+) 1194 WP_001153980.1 chloramphenicol efflux transporter CxpE -
  HFD82_RS04610 (HFD82_04610) hda 959599..960297 (+) 699 WP_001249535.1 DnaA regulatory inactivator Hda -
  HFD82_RS04615 (HFD82_04615) rbtA 960614..962464 (+) 1851 WP_000920012.1 rhombotarget A -
  HFD82_RS04625 (HFD82_04625) - 963735..964505 (+) 771 Protein_878 CSLREA domain-containing protein -
  HFD82_RS04630 (HFD82_04630) - 964546..965475 (+) 930 WP_001091151.1 IS5-like element ISAba10 family transposase -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 92426.69 Da        Isoelectric Point: 8.6357

>NTDB_id=435562 HFD82_RS04575 WP_000472705.1 951140..953572(+) (comA/comEC) [Acinetobacter baumannii strain DT-Ab007]
MFKIILLGWIGGIALMGIDFPLIMQYEKVGEALLLLAFIFYLYKRPMFVDRPFLKAVFCLLCTTSLFMVGYHYAEKALIE
RLEQRETDTRNLDIIVYINRLSEEKDNKVQQTAQVLNFSKEPVNWLLYLKSNNQNLLKNNQNLELGHYYRISGKTRPAHS
YATPGAFDQEKWFIQRNIMSGFNVRYIEPLSLDEIYRLGYQQHLKEQQSFSNSFRLNIEKLRLTFRQILNSSSLQQKGLI
LALLTGDESLLSDETQLQFKQLGISHLLAISGPHVLIFAIMLSWACHQFISRYYPQIYLWKPKQVLMAVPCCLGVLIYTA
FVGFEIPALRTLLSAFIFIGFLLLKQPIKPFTLLVYSASLLLLIDPFSVLSAGFWLSYGACFILLRIYQTIAQLPEQQFL
SLSSKMIFMGKVLIESQGKIFIALSPLTLLFFQQISWVAPLTNIIAVPIVGGVIVPLNIMAACAWFIVKPFGNMLFHFND
MLLSILLSCLGLLEKLSLPLQGISLTPLSLLAISFAIIILFLPKGILPKTWGILCCLPLVIMNKTSQQIQLNILDVGQGQ
AIFLQHSEQNWLIDTGGSYDEKIFSIGQNVVVPFLRQQGVRQLDHVVLSHLDQDHSGAFPLIQQEIPVKQLISNEQLPND
LKQPFQYCHQGQQWHYPELDIQILWPKEKDLAFVASNQNQYSCVVYLQFKKVGGYQNFLIMGDAGWEAEYELLKDYPNLK
IDVLVLGHHGSKHSSAYDFLATLKPKLAIASAGFDNRYGHPSQQVIARLKALHIPLKSTVEQGTLSFVLENHKIVLHDRR
LDRLWLSRGF

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=435562 HFD82_RS04575 WP_000472705.1 951140..953572(+) (comA/comEC) [Acinetobacter baumannii strain DT-Ab007]
ATGTTTAAGATTATTCTATTGGGGTGGATTGGCGGTATTGCATTGATGGGAATAGATTTCCCTTTAATCATGCAATATGA
AAAAGTGGGCGAGGCTCTACTGTTACTTGCCTTTATTTTTTATCTTTATAAACGACCAATGTTCGTTGATCGACCATTTT
TAAAGGCAGTGTTTTGCTTATTATGTACAACAAGTCTTTTTATGGTTGGTTACCACTATGCTGAAAAAGCACTGATTGAA
CGATTAGAACAAAGAGAAACGGATACCCGAAATCTCGACATTATTGTTTATATAAACCGTTTAAGTGAAGAAAAAGATAA
TAAGGTTCAACAAACTGCACAAGTTCTAAATTTTTCTAAAGAACCGGTGAATTGGTTGCTATATTTAAAAAGTAATAATC
AAAATTTATTAAAGAATAATCAGAATCTTGAATTAGGTCACTATTATCGAATATCTGGAAAAACAAGACCTGCGCATAGT
TATGCCACCCCAGGAGCTTTTGATCAGGAAAAATGGTTTATTCAGCGAAATATTATGTCTGGTTTTAATGTGAGATATAT
TGAGCCTTTAAGTCTCGATGAAATCTATCGATTGGGCTATCAGCAACATTTAAAAGAACAACAGTCTTTTTCCAATAGTT
TTCGTTTAAATATAGAAAAACTTCGCTTAACTTTTAGGCAAATATTAAACAGCTCATCTCTACAGCAAAAGGGTTTAATT
TTAGCTTTGCTGACAGGTGATGAAAGCCTTTTATCAGATGAAACTCAACTACAGTTCAAACAATTAGGAATTAGTCATTT
ATTGGCGATCTCAGGCCCACATGTGCTCATTTTTGCCATTATGTTATCTTGGGCATGTCATCAATTTATCAGTCGTTATT
ATCCTCAAATTTACTTATGGAAACCGAAACAGGTTTTGATGGCTGTACCATGCTGCCTTGGTGTTTTAATTTATACTGCA
TTTGTAGGTTTCGAAATTCCTGCACTACGAACATTATTATCAGCATTTATATTTATTGGATTTCTATTATTAAAACAACC
TATTAAACCTTTTACATTACTCGTATATAGCGCAAGTCTACTGTTGCTAATTGACCCGTTTAGTGTGCTTTCTGCAGGTT
TTTGGCTGTCTTATGGGGCATGCTTTATTTTATTAAGAATTTACCAAACTATAGCGCAGCTACCTGAGCAACAGTTTTTA
AGTCTGAGCTCAAAAATGATTTTTATGGGTAAGGTGTTAATTGAGTCTCAAGGCAAAATATTTATTGCATTGAGTCCCTT
AACCTTACTTTTCTTTCAACAAATTTCTTGGGTTGCTCCATTAACCAATATTATTGCCGTGCCTATTGTTGGTGGTGTTA
TTGTCCCTTTAAACATCATGGCTGCTTGCGCATGGTTTATAGTAAAACCGTTTGGAAATATGCTTTTTCATTTCAATGAT
ATGTTGCTCAGCATATTGCTGAGTTGTTTGGGCTTATTAGAAAAACTCTCTTTACCATTACAAGGTATAAGCTTGACGCC
ACTGTCTTTATTAGCGATTAGTTTTGCCATAATTATTTTATTTTTACCTAAAGGAATTCTGCCCAAAACTTGGGGGATAT
TATGTTGTTTACCCTTAGTTATTATGAACAAAACGAGTCAACAAATTCAGCTTAATATTTTAGATGTTGGACAGGGGCAA
GCCATTTTTTTACAACATTCCGAACAAAACTGGTTAATTGATACAGGCGGTTCTTACGATGAAAAAATATTTAGTATTGG
ACAAAATGTTGTAGTGCCTTTTCTACGTCAGCAAGGCGTAAGACAATTAGATCATGTTGTGCTATCCCATCTTGATCAAG
ACCATAGTGGCGCGTTTCCTCTTATTCAACAAGAGATTCCTGTAAAGCAGCTTATTTCGAATGAACAATTACCAAATGAT
TTAAAGCAACCATTCCAATATTGCCATCAAGGGCAACAATGGCATTATCCTGAGTTAGATATTCAAATTTTATGGCCTAA
AGAAAAAGATCTGGCTTTTGTTGCTTCTAACCAGAATCAATATTCTTGTGTTGTATATCTTCAATTTAAAAAAGTTGGTG
GTTACCAAAATTTTCTTATTATGGGCGATGCAGGATGGGAAGCCGAATACGAGTTATTAAAAGATTATCCTAACTTGAAG
ATAGATGTGTTGGTGCTAGGGCATCATGGAAGTAAGCACAGTTCGGCTTATGATTTCTTGGCGACCTTAAAACCTAAACT
GGCCATTGCATCGGCAGGGTTTGATAACCGTTATGGCCATCCTAGCCAACAAGTTATAGCACGTTTAAAAGCTCTACATA
TTCCGCTAAAAAGCACTGTGGAACAAGGGACCTTAAGTTTTGTGTTGGAAAATCACAAAATAGTTTTACATGACCGACGT
TTGGATAGGCTCTGGTTGAGTAGAGGTTTTTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(33-188)

Metallo-beta-lactamase superfamily (Lactamase_B)

(555-639)

Competence protein (Competence)

(243-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A231SZ39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

98.025

100

0.98
  comA/comEC Acinetobacter baumannii strain A118

97.037

100

0.97
  comA/comEC Acinetobacter baylyi ADP1

50.246

100

0.504