Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   IMP76_RS10650 Genome accession   NZ_CP062871
Coordinates   2144213..2144872 (+) Length   219 a.a.
NCBI ID   WP_001221502.1    Uniprot ID   B7LGG8
Organism   Escherichia coli strain Res13-Lact-PEA14-20     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2139213..2149872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMP76_RS10630 (IMP76_10625) plsC 2139360..2140097 (-) 738 WP_000965703.1 1-acylglycerol-3-phosphate O-acyltransferase -
  IMP76_RS10635 (IMP76_10630) parC 2140330..2142588 (-) 2259 WP_001281881.1 DNA topoisomerase IV subunit A -
  IMP76_RS10640 (IMP76_10635) ygiV 2143134..2143616 (-) 483 WP_000183494.1 GyrI-like domain-containing protein -
  IMP76_RS10645 (IMP76_10640) ygiW 2143669..2144061 (-) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  IMP76_RS10650 (IMP76_10645) ciaR 2144213..2144872 (+) 660 WP_001221502.1 quorum sensing response regulator transcription factor QseB Regulator
  IMP76_RS10655 (IMP76_10650) qseC 2144869..2146218 (+) 1350 WP_000673355.1 quorum sensing histidine kinase QseC -
  IMP76_RS10660 (IMP76_10655) ygiZ 2146264..2146596 (-) 333 WP_000912120.1 DUF2645 family protein -
  IMP76_RS10665 (IMP76_10660) mdaB 2146915..2147496 (+) 582 WP_000065439.1 NADPH:quinone oxidoreductase MdaB -
  IMP76_RS10670 (IMP76_10665) ygiN 2147527..2147841 (+) 315 WP_000958598.1 putative quinol monooxygenase -
  IMP76_RS10675 (IMP76_10670) parE 2147889..2149781 (-) 1893 WP_000195296.1 DNA topoisomerase IV subunit B -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24745.66 Da        Isoelectric Point: 6.6543

>NTDB_id=435187 IMP76_RS10650 WP_001221502.1 2144213..2144872(+) (ciaR) [Escherichia coli strain Res13-Lact-PEA14-20]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=435187 IMP76_RS10650 WP_001221502.1 2144213..2144872(+) (ciaR) [Escherichia coli strain Res13-Lact-PEA14-20]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCGCCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGAGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LGG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365