Detailed information NTG0434907

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HCU79_RS18820
• Genome accession: NZ_CP050794
• Coordinates: 4126739..4127611 (+)
• Length: 290 a.a.
• NCBI ID: WP_404837247.1
• Uniprot ID: -
• Organism: Aeromonas media strain FiBL-01
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4121739..4132611

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HCU79_RS18800 (HCU79_18790)	nadC	4121940..4122803 (+)	864	WP_404837244.1	carboxylating nicotinate-nucleotide diphosphorylase	-
HCU79_RS18805	-	4123116..4123577 (+)	462	WP_404837245.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
HCU79_RS18810 (HCU79_18800)	pilB	4123581..4125287 (+)	1707	WP_404837246.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
HCU79_RS18815 (HCU79_18805)	pilC	4125417..4126658 (+)	1242	WP_202047337.1	type II secretion system F family protein	Machinery gene
HCU79_RS18820 (HCU79_18810)	pilD	4126739..4127611 (+)	873	WP_404837247.1	prepilin peptidase	Machinery gene
HCU79_RS18825 (HCU79_18815)	coaE	4127630..4128244 (+)	615	WP_404837248.1	dephospho-CoA kinase	-
HCU79_RS18830 (HCU79_18820)	zapD	4128282..4129004 (+)	723	WP_162519286.1	cell division protein ZapD	-
HCU79_RS18835 (HCU79_18825)	yacG	4129017..4129211 (+)	195	WP_042053535.1	DNA gyrase inhibitor YacG	-
HCU79_RS18840 (HCU79_18830)	mutT	4129283..4129687 (-)	405	WP_247625411.1	8-oxo-dGTP diphosphatase MutT	-
HCU79_RS18845 (HCU79_18835)	secA	4129843..4132563 (-)	2721	WP_404837249.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31928.14 Da
• Isoelectric Point: 7.0272

>NTDB_id=434907 HCU79_RS18820 WP_404837247.1 4126739..4127611(+) (pilD) [Aeromonas media strain FiBL-01]
MVPLNELAQGLPWLYLSLVFLFSLMVGSFLNVVIHRLPIMLEREWQAEYSDYFGSEVATSPAEPYNLMVPRSRCPHCDHP
IGALENIPLLSWLWLKGRCRQCKAPISARYPLVELLTALLSVAVAANLTPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGHGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLGIVL

Nucleotide

• Length: 873 bp

>NTDB_id=434907 HCU79_RS18820 WP_404837247.1 4126739..4127611(+) (pilD) [Aeromonas media strain FiBL-01]
ATGGTGCCTCTGAACGAACTGGCCCAGGGCCTTCCCTGGCTCTATCTCTCCCTGGTTTTTCTCTTTTCCCTGATGGTTGG
CAGCTTTCTGAACGTGGTGATCCATCGTCTGCCCATCATGCTGGAGCGTGAGTGGCAGGCCGAATACAGTGACTACTTCG
GCAGCGAAGTGGCCACCTCCCCCGCCGAACCCTACAACCTGATGGTGCCACGCTCCCGCTGCCCGCACTGCGATCACCCC
ATAGGCGCGCTGGAGAACATCCCCCTGCTGAGCTGGCTCTGGCTCAAGGGTCGCTGCCGACAATGCAAGGCGCCCATCTC
TGCTCGCTATCCCCTGGTCGAGCTGCTGACCGCCCTGTTGTCGGTCGCCGTCGCGGCGAACCTGACTCCGGGATGGGGCA
CCCTGGCCGCGCTCTTGCTGACCTGGGTACTGGTGGCTCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTCACCCTGCCGCTGCTATGGGGCGGTCTGCTGTTCAATCTGGCGGGCGGCTTTGTGCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCGTTCAAGCTGCTGACCGGCAAGGAGGGGATGGGCCATG
GCGACTTCAAGCTGCTGGCTGCGCTCGGTGCCTGGCTGGGCTGGCAGGCACTGCCCATAGTGTTGCTGCTCTCGTCTCTG
GTCGGCGCCATCATCGGCATAGGGCTCATACTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTTGGCCCCTACCT
CGCCATCGCGGGCTGGATAGCGCTGCTGTGGGGGGATAACATCACTCGCTGGTATCTGGGCATAGTTCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.972	97.931	0.607
pilD	Vibrio campbellii strain DS40M4	57.292	99.31	0.569
pilD	Acinetobacter nosocomialis M2	53.405	96.207	0.514
pilD	Acinetobacter baumannii D1279779	53.047	96.207	0.51
pilD	Neisseria gonorrhoeae MS11	49.624	91.724	0.455