NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	HC168_RS02380	Genome accession	NZ_CP050789
Coordinates	468114..468986 (-)	Length	290 a.a.
NCBI ID	WP_395949383.1	Uniprot ID	-
Organism	Aeromonas media strain FiBL-4043
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 463114..473986

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HC168_RS02355 (HC168_02355)	secA	463164..465884 (+)	2721	WP_111911128.1	preprotein translocase subunit SecA	-
HC168_RS02360 (HC168_02360)	mutT	466040..466444 (+)	405	WP_111911126.1	8-oxo-dGTP diphosphatase MutT	-
HC168_RS02365 (HC168_02365)	yacG	466517..466711 (-)	195	WP_025328449.1	DNA gyrase inhibitor YacG	-
HC168_RS02370 (HC168_02370)	zapD	466721..467443 (-)	723	WP_162520171.1	cell division protein ZapD	-
HC168_RS02375 (HC168_02375)	coaE	467481..468095 (-)	615	WP_404835798.1	dephospho-CoA kinase	-
HC168_RS02380 (HC168_02380)	pilD	468114..468986 (-)	873	WP_395949383.1	prepilin peptidase	Machinery gene
HC168_RS02385 (HC168_02385)	pilC	469067..470308 (-)	1242	WP_106885656.1	type II secretion system F family protein	Machinery gene
HC168_RS02390 (HC168_02390)	pilB	470439..472145 (-)	1707	WP_395949384.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
HC168_RS02395 (HC168_02395)	-	472149..472583 (-)	435	WP_395949385.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
HC168_RS02400 (HC168_02400)	nadC	472896..473759 (-)	864	WP_395949386.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 31904.19 Da Isoelectric Point: 6.6290

                                >NTDB_id=434749 HC168_RS02380 WP_395949383.1 468114..468986(-) (pilD) [Aeromonas media strain FiBL-4043]

MVPLIELAQGLPWLYLSLVFLFSLMVGSFLNVVIHRLPIMLEREWQAEYSDYFGSEVATSPAEPYNLMVPRSRCPHCDHP

IGALENIPLLSWLWLKGRCRQCKAPISARYPLVELLTALLSVAVAATLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLAGGLVPLADAVIGAMAGYLVLWGLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL

VGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLDIVL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=434749 HC168_RS02380 WP_395949383.1 468114..468986(-) (pilD) [Aeromonas media strain FiBL-4043]

ATGGTGCCTCTGATCGAACTGGCCCAGGGCCTGCCCTGGCTCTATCTCTCCCTGGTTTTTCTCTTCTCCCTGATGGTTGG

CAGCTTCCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATACAGTGACTACTTCG

GCAGCGAAGTGGCCACCTCCCCCGCCGAGCCCTACAACCTGATGGTGCCGCGCTCCCGCTGCCCGCACTGCGATCACCCC

ATAGGCGCGCTGGAGAACATCCCCCTGTTGAGCTGGCTCTGGCTCAAGGGGCGCTGCCGGCAATGCAAGGCGCCTATCTC

GGCCCGCTATCCCCTGGTCGAGCTGCTGACCGCCCTGTTGTCGGTCGCCGTCGCCGCGACCCTGGCTCCGGGATGGGGTA

CCCTGGCCGCACTCTTGCTGACCTGGGTACTGGTGGCCCTCACCTTCATCGATCTGGACAAGATGTTGCTGCCGGACCAA

CTCACCCTGCCGCTGCTGTGGGGCGGTCTGCTGTTCAATCTGGCGGGGGGCTTAGTGCCGCTGGCCGATGCGGTGATCGG

TGCCATGGCCGGCTATCTGGTGCTCTGGGGCCTCTACTGGGCGTTCAAGCTGCTGACCGGCAAGGAGGGGATGGGCTATG

GAGACTTCAAGCTGCTGGCGGCGCTCGGAGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCGTCACTG

GTCGGCGCCATCATCGGCATAGGGCTCATACTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTTGGCCCCTATCT

CGCCATCGCGGGCTGGATAGCGCTGCTGTGGGGGGATAACATCACCCGCTGGTATCTGGACATCGTTCTCTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	61.754	98.276	0.607
pilD	Vibrio campbellii strain DS40M4	57.093	99.655	0.569
pilD	Acinetobacter nosocomialis M2	53.597	95.862	0.514
pilD	Acinetobacter baumannii D1279779	53.237	95.862	0.51
pilD	Neisseria gonorrhoeae MS11	50	89.655	0.448

Detailed information NTG0434749