Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   HCU65_RS15995 Genome accession   NZ_CP050705
Coordinates   3214874..3215017 (-) Length   47 a.a.
NCBI ID   WP_003327149.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain PENSV20     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3209874..3220017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU65_RS15970 (HCU65_16010) - 3210228..3210608 (-) 381 WP_219946562.1 hotdog fold thioesterase -
  HCU65_RS15975 (HCU65_16015) comA 3210626..3211267 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  HCU65_RS15980 (HCU65_16020) comP 3211348..3213642 (-) 2295 WP_219946563.1 histidine kinase Regulator
  HCU65_RS15985 (HCU65_16025) comX 3213653..3213817 (-) 165 WP_106045488.1 competence pheromone ComX -
  HCU65_RS15990 (HCU65_16030) - 3213830..3214690 (-) 861 WP_219947832.1 polyprenyl synthetase family protein -
  HCU65_RS15995 (HCU65_16035) degQ 3214874..3215017 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  HCU65_RS16000 (HCU65_16040) - 3215477..3215836 (+) 360 WP_106033956.1 hypothetical protein -
  HCU65_RS16005 (HCU65_16045) - 3215855..3217087 (-) 1233 WP_003327147.1 EAL and HDOD domain-containing protein -
  HCU65_RS16010 (HCU65_16050) - 3217225..3218691 (-) 1467 WP_088117879.1 nicotinate phosphoribosyltransferase -
  HCU65_RS16015 (HCU65_16055) - 3218707..3219258 (-) 552 WP_003327145.1 cysteine hydrolase family protein -
  HCU65_RS16020 (HCU65_16060) - 3219366..3219764 (-) 399 WP_106033954.1 YueI family protein -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5645.61 Da        Isoelectric Point: 8.5787

>NTDB_id=434148 HCU65_RS15995 WP_003327149.1 3214874..3215017(-) (degQ) [Bacillus atrophaeus strain PENSV20]
MEKKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKFTYAMKIS

Nucleotide


Download         Length: 144 bp        

>NTDB_id=434148 HCU65_RS15995 WP_003327149.1 3214874..3215017(-) (degQ) [Bacillus atrophaeus strain PENSV20]
GTGGAAAAGAAAAAACTTGAAGAAGTGAAACAATTATTATTCCGACTCGAACTTGATATCAAAGAAACGACAGATTCATT
ACGAAACATTAACAAAAGCATTGATCAGCTCGATAAATTCACATATGCAATGAAAATTTCGTGA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

95.455

93.617

0.894