Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   HCU65_RS15975 Genome accession   NZ_CP050705
Coordinates   3210626..3211267 (-) Length   213 a.a.
NCBI ID   WP_003327154.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain PENSV20     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3205626..3216267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU65_RS15940 (HCU65_15980) - 3206819..3207250 (+) 432 WP_003327161.1 Na(+)/H(+) antiporter subunit B -
  HCU65_RS15945 (HCU65_15985) - 3207250..3207591 (+) 342 WP_003327160.1 Na(+)/H(+) antiporter subunit C -
  HCU65_RS15950 (HCU65_15990) - 3207584..3209065 (+) 1482 WP_106033960.1 Na+/H+ antiporter subunit D -
  HCU65_RS15955 (HCU65_15995) - 3209071..3209547 (+) 477 WP_003327158.1 Na+/H+ antiporter subunit E -
  HCU65_RS15960 (HCU65_16000) - 3209547..3209831 (+) 285 WP_003327157.1 Na(+)/H(+) antiporter subunit F1 -
  HCU65_RS15965 (HCU65_16005) mnhG 3209815..3210189 (+) 375 WP_106033959.1 monovalent cation/H(+) antiporter subunit G -
  HCU65_RS15970 (HCU65_16010) - 3210228..3210608 (-) 381 WP_219946562.1 hotdog fold thioesterase -
  HCU65_RS15975 (HCU65_16015) comA 3210626..3211267 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  HCU65_RS15980 (HCU65_16020) comP 3211348..3213642 (-) 2295 WP_219946563.1 histidine kinase Regulator
  HCU65_RS15985 (HCU65_16025) comX 3213653..3213817 (-) 165 WP_106045488.1 competence pheromone ComX -
  HCU65_RS15990 (HCU65_16030) - 3213830..3214690 (-) 861 WP_219947832.1 polyprenyl synthetase family protein -
  HCU65_RS15995 (HCU65_16035) degQ 3214874..3215017 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  HCU65_RS16000 (HCU65_16040) - 3215477..3215836 (+) 360 WP_106033956.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23944.30 Da        Isoelectric Point: 4.7742

>NTDB_id=434146 HCU65_RS15975 WP_003327154.1 3210626..3211267(-) (comA) [Bacillus atrophaeus strain PENSV20]
MKKILVIDDHPAVMEGTKTILETDANLSVDCLSPDASEHFVHNHDFAAYDLILMDLNLGEINGMELSKKILKENPLCKII
VYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNDEILVDFSYFKQLVTHQKTKPAAASQNDQDVLTPRECLI
LQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=434146 HCU65_RS15975 WP_003327154.1 3210626..3211267(-) (comA) [Bacillus atrophaeus strain PENSV20]
ATGAAAAAGATACTTGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTCTGGAAACAGATGCAAATCT
TTCTGTCGATTGTCTCAGTCCTGATGCCAGTGAACATTTTGTTCATAATCATGATTTTGCGGCTTATGATCTCATCTTAA
TGGATTTAAATCTAGGTGAAATCAACGGGATGGAGCTTTCTAAAAAGATTTTAAAAGAGAATCCTCTCTGCAAAATCATT
GTTTATACCGGCTATGAAGTGGAGGATTATTTTGAGGAGGCCATACGTGCGGGGCTGCACGGCGCGATCAGCAAGACCGA
ATCAAAAGAAAAGATTACGCAATACATATATCATGTGCTCAATGATGAAATTTTAGTTGATTTTTCTTATTTTAAACAGT
TGGTCACTCATCAAAAAACAAAACCTGCTGCCGCTTCGCAAAATGATCAAGATGTTCTGACGCCAAGAGAATGTCTCATT
CTTCAAGAGGTAGAAAAGGGATTTACCAATCAGGAAATAGCTGACGCGCTCCATCTGAGTAAGCGTTCGATTGAATACAG
CCTGACGTCCATTTTCAACAAACTGAACGTCGGTTCCCGGACGGAAGCGGTACTGATCGCAAAATCGGATGGCGTACTTT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

89.72

100

0.901