Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KU884_RS15755 Genome accession   NZ_CP050695
Coordinates   3326572..3327924 (+) Length   450 a.a.
NCBI ID   WP_174813764.1    Uniprot ID   -
Organism   Aquisalimonas sp. 2447     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3321572..3332924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU884_RS15735 (HC341_15665) - 3322829..3323416 (-) 588 WP_167783510.1 hypothetical protein -
  KU884_RS15740 (HC341_15670) - 3323419..3324039 (-) 621 WP_167783511.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  KU884_RS15745 (HC341_15675) - 3324076..3324567 (-) 492 WP_167783512.1 type VI secretion system tube protein Hcp -
  KU884_RS15750 (HC341_15680) - 3324947..3326569 (+) 1623 WP_167783513.1 PAS domain-containing sensor histidine kinase -
  KU884_RS15755 (HC341_15685) pilR 3326572..3327924 (+) 1353 WP_174813764.1 sigma-54 dependent transcriptional regulator Regulator
  KU884_RS15760 (HC341_15690) - 3328306..3328770 (+) 465 WP_217351510.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  KU884_RS15765 (HC341_15695) - 3328979..3329629 (+) 651 WP_167783516.1 hypothetical protein -
  KU884_RS19295 - 3329801..3329909 (+) 109 Protein_3124 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  KU884_RS19175 (HC341_15700) - 3329948..3330274 (+) 327 WP_371807963.1 hypothetical protein -
  KU884_RS15775 (HC341_15705) - 3330338..3330712 (-) 375 WP_254432274.1 diguanylate cyclase domain-containing protein -
  KU884_RS15780 (HC341_15710) - 3330781..3332382 (-) 1602 WP_254432077.1 IS66 family transposase -
  KU884_RS15785 (HC341_15715) tnpB 3332428..3332784 (-) 357 WP_167783519.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 49498.39 Da        Isoelectric Point: 4.5720

>NTDB_id=434049 KU884_RS15755 WP_174813764.1 3326572..3327924(+) (pilR) [Aquisalimonas sp. 2447]
MERPLALVIDDEPDICELIHLTLQRMDIDSELAGTLKEARRLLEEHSFDLCITDMQLPDGNGIDLVGEITQERPELPTAV
ITAYGSMDAAVQALKAGAFDFVPKPVDLAMLRQLVDGAMQLTRGPKIDRRSRDTLLGDSPAMQKIRGTIIKLARSNAPVY
ISGESGTGKELVARTIHDKGNRREQPFVPVNCGAIPSELMESEFFGHVKGAFTGANRDKQGLFQAADGGTLFLDEVAELP
PAMQVKLLRAIQEKAVRPVGAEHEVSVDVRILSATHQDLAQLVEEGTFRQDLFYRINVIQLAVPSLRERRDDIPLLVNHV
LERLTGGDDAAPVRVSDTAMGNLRAYAFPGNVRELENILERALTLCEGDTIEAEDLQLPDHPGNGAAVEAAEPAPEPDDD
FALDDYLADVERNVVVKALEKTRYNKTAAAQLLGISFRALRYKLKKLDME

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=434049 KU884_RS15755 WP_174813764.1 3326572..3327924(+) (pilR) [Aquisalimonas sp. 2447]
ATGGAACGTCCACTGGCCCTGGTCATCGATGACGAACCGGACATCTGCGAACTGATCCACCTGACCCTGCAGCGGATGGA
CATCGACTCCGAGCTCGCCGGCACCCTGAAAGAAGCGCGGCGATTGCTGGAGGAACACAGCTTCGATCTGTGCATCACCG
ACATGCAGCTCCCCGACGGCAACGGCATCGACCTGGTGGGCGAGATCACCCAGGAACGCCCGGAACTGCCCACGGCGGTG
ATTACCGCCTACGGCAGCATGGACGCCGCGGTCCAGGCCCTGAAGGCCGGCGCCTTCGACTTCGTCCCCAAACCCGTGGA
CCTCGCCATGCTGCGCCAGCTCGTCGACGGCGCCATGCAGCTCACCCGCGGCCCGAAGATCGACCGCCGCTCCCGGGACA
CCCTGCTGGGCGACTCCCCCGCCATGCAGAAAATCCGCGGCACCATCATCAAGCTCGCCCGCAGCAACGCCCCCGTGTAC
ATCAGCGGCGAGTCCGGCACCGGCAAGGAGCTTGTCGCCCGCACCATCCACGACAAGGGCAACCGCCGCGAGCAGCCCTT
CGTGCCCGTGAACTGCGGCGCCATCCCCTCGGAACTCATGGAAAGCGAGTTCTTCGGCCACGTGAAGGGTGCGTTCACCG
GCGCCAACCGCGACAAGCAGGGCCTGTTCCAGGCCGCCGACGGTGGCACCCTGTTCCTGGACGAAGTCGCCGAACTCCCG
CCGGCCATGCAGGTGAAGCTCCTGCGCGCCATCCAGGAAAAGGCCGTACGGCCGGTGGGTGCCGAACACGAGGTGTCCGT
GGACGTGCGCATCCTCTCCGCCACCCACCAGGATCTCGCCCAGCTCGTCGAGGAAGGCACCTTCCGGCAGGACCTGTTCT
ACCGCATCAACGTCATCCAGCTTGCCGTGCCCAGCCTGCGGGAGCGTCGTGACGACATTCCGCTGCTGGTGAACCACGTG
CTGGAGCGCCTCACCGGCGGCGACGACGCCGCCCCCGTGCGCGTGAGCGACACCGCCATGGGCAACCTCCGCGCCTACGC
CTTCCCCGGCAACGTACGCGAACTGGAGAACATCCTGGAACGCGCCCTCACCCTCTGCGAGGGCGACACCATCGAGGCCG
AAGACCTCCAGCTCCCCGACCACCCCGGCAACGGCGCCGCCGTGGAGGCCGCTGAACCGGCCCCGGAACCGGACGACGAC
TTCGCCCTGGACGACTACCTGGCCGACGTGGAACGCAACGTGGTGGTCAAGGCCCTGGAGAAGACCCGCTACAACAAGAC
CGCCGCCGCCCAGCTCCTCGGCATCAGCTTCCGCGCCCTGCGCTACAAGCTCAAGAAGCTGGACATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(407-447)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.971

100

0.631
  pilR Acinetobacter baumannii strain A118

47.732

100

0.491
  luxO Vibrio cholerae strain A1552

37.639

99.778

0.376