Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HCU70_RS13660 Genome accession   NZ_CP050690
Coordinates   218..634 (-) Length   138 a.a.
NCBI ID   WP_280841928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PMB179-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1..5634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU70_RS13655 dprA 76..165 (-) 90 WP_280841927.1 hypothetical protein Machinery gene
  HCU70_RS13660 dprA 218..634 (-) 417 WP_280841928.1 DNA-processing protein DprA Machinery gene
  HCU70_RS00005 (HCU70_00005) - 807..2018 (-) 1212 Protein_2 aminoacyltransferase -
  HCU70_RS00010 (HCU70_00010) - 2075..3190 (-) 1116 Protein_3 LysM peptidoglycan-binding domain-containing protein -
  HCU70_RS00015 (HCU70_00015) sucD 3418..4314 (-) 897 WP_167774908.1 succinate--CoA ligase subunit alpha -
  HCU70_RS00020 (HCU70_00020) sucC 4336..5502 (-) 1167 WP_001020808.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 16699.64 Da        Isoelectric Point: 9.5298

>NTDB_id=433971 HCU70_RS13660 WP_280841928.1 218..634(-) (dprA) [Staphylococcus aureus strain PMB179-1]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFFIIK

Nucleotide


Download         Length: 417 bp        

>NTDB_id=433971 HCU70_RS13660 WP_280841928.1 218..634(-) (dprA) [Staphylococcus aureus strain PMB179-1]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTTATTATCAAATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.529

98.551

0.971
  dprA Staphylococcus aureus N315

97.794

98.551

0.964