Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HC353_RS02230 Genome accession   NZ_CP050648
Coordinates   447183..447695 (+) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus faecium strain BIOPOP-3 ALE     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 442183..452695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC353_RS02220 (HC353_02220) gyrA 444126..446597 (+) 2472 WP_104885922.1 DNA gyrase subunit A -
  HC353_RS02225 (HC353_02225) rpsF 446833..447132 (+) 300 WP_002293129.1 30S ribosomal protein S6 -
  HC353_RS02230 (HC353_02230) ssb 447183..447695 (+) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  HC353_RS02235 (HC353_02235) rpsR 447721..447957 (+) 237 WP_002288370.1 30S ribosomal protein S18 -
  HC353_RS02240 (HC353_02240) - 448100..450073 (+) 1974 WP_002336165.1 DHH family phosphoesterase -
  HC353_RS02245 (HC353_02245) rplI 450079..450531 (+) 453 WP_002293132.1 50S ribosomal protein L9 -
  HC353_RS02250 (HC353_02250) dnaB 450806..452173 (+) 1368 WP_002288373.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=433848 HC353_RS02230 WP_002288368.1 447183..447695(+) (ssb) [Enterococcus faecium strain BIOPOP-3 ALE]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=433848 HC353_RS02230 WP_002288368.1 447183..447695(+) (ssb) [Enterococcus faecium strain BIOPOP-3 ALE]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTAACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388