Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   HCN55_RS17110 Genome accession   NZ_CP050532
Coordinates   3249658..3250302 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. SMY     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3244658..3255302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCN55_RS17075 (HCN55_17085) mrpB 3245850..3246281 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  HCN55_RS17080 (HCN55_17090) mrpC 3246281..3246622 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  HCN55_RS17085 (HCN55_17095) mrpD 3246615..3248096 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  HCN55_RS17090 (HCN55_17100) mrpE 3248102..3248578 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  HCN55_RS17095 (HCN55_17105) mrpF 3248578..3248862 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  HCN55_RS17100 (HCN55_17110) mnhG 3248846..3249220 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  HCN55_RS17105 (HCN55_17115) yuxO 3249259..3249639 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  HCN55_RS17110 (HCN55_17120) comA 3249658..3250302 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  HCN55_RS17115 (HCN55_17125) comP 3250383..3252692 (-) 2310 WP_003242894.1 two-component system sensor histidine kinase ComP Regulator
  HCN55_RS17120 (HCN55_17130) comX 3252707..3252874 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  HCN55_RS17125 (HCN55_17135) comQ 3252862..3253761 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  HCN55_RS17130 (HCN55_17140) degQ 3253946..3254086 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  HCN55_RS17135 (HCN55_17145) - 3254308..3254433 (+) 126 WP_003228793.1 hypothetical protein -
  HCN55_RS17140 (HCN55_17150) - 3254547..3254915 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=433766 HCN55_RS17110 WP_003220716.1 3249658..3250302(-) (comA) [Bacillus subtilis subsp. subtilis str. SMY]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=433766 HCN55_RS17110 WP_003220716.1 3249658..3250302(-) (comA) [Bacillus subtilis subsp. subtilis str. SMY]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1