Detailed information NTG0043371

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SCIM_RS09420
• Genome accession: NC_018073
• Coordinates: 1916507..1917604 (+)
• Length: 365 a.a.
• NCBI ID: WP_003075474.1
• Uniprot ID: -
• Organism: Streptococcus intermedius JTH08
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1911507..1922604

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCIM_RS09395 (SCIM_1690)	pgsA	1911986..1912525 (-)	540	WP_003077406.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SCIM_RS09400 (SCIM_1691)	rodZ	1912536..1913348 (-)	813	WP_003077154.1	cytoskeleton protein RodZ	-
SCIM_RS09405 (SCIM_1692)	yfmH	1913407..1914702 (-)	1296	WP_003077336.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SCIM_RS09410 (SCIM_1693)	yfmF	1914702..1915949 (-)	1248	WP_003077165.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SCIM_RS09415 (SCIM_1694)	yaaA	1916125..1916505 (+)	381	WP_003075472.1	S4 domain-containing protein YaaA	-
SCIM_RS09420 (SCIM_1695)	recF	1916507..1917604 (+)	1098	WP_003075474.1	DNA replication/repair protein RecF	Machinery gene
SCIM_RS09425 (SCIM_1696)	guaB	1918445..1919926 (-)	1482	WP_003075475.1	IMP dehydrogenase	-
SCIM_RS09430 (SCIM_1697)	trpS	1920064..1921089 (-)	1026	WP_003075477.1	tryptophan--tRNA ligase	-
SCIM_RS09435 (SCIM_1698)	galE	1921171..1922166 (-)	996	WP_003077140.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 42081.36 Da
• Isoelectric Point: 8.4364

>NTDB_id=43371 SCIM_RS09420 WP_003075474.1 1916507..1917604(+) (recF) [Streptococcus intermedius JTH08]
MWLKNLQIQYFRNYKLTEIDFHPGLNIFLGENAQGKTNILEAIYFLALTRSHRTRSDKDLIYFSNDSLKISGQLAKETGN
ISLEIDLTPKGRTTKVNHLKQSKLSDYVGNMNVVLFAPEDLQLIKGTPALRRKFIDIELGQIKPIYLSDLSQYHHVLKQR
NAYLKAAPKIDETFLTVLDDQLVEFGCRVIQHRTEFLKKLEHFGQQKHLELSSNLENLTIKYCSSIPLSDPNKLKESFQI
ALRQSRSRDLFKKNTGIGPHRDDIAFYINNMNATFGSQGQHRSMVLSLKLAEIELMETVTKEKPILLLDDVMSELDNNRQ
LNLLETISQNIQTFITTTTLEHLKHLPSDIKIFSIHDGHFMENQV

Nucleotide

• Length: 1098 bp

>NTDB_id=43371 SCIM_RS09420 WP_003075474.1 1916507..1917604(+) (recF) [Streptococcus intermedius JTH08]
ATGTGGTTAAAAAACTTACAAATTCAATATTTTCGCAATTATAAATTAACTGAAATAGATTTTCACCCTGGTCTCAATAT
TTTTTTAGGGGAAAACGCTCAAGGAAAAACAAATATTTTAGAAGCTATCTATTTTCTTGCGTTGACACGAAGTCATCGAA
CTCGTTCAGATAAAGATTTAATTTATTTTTCTAACGATTCTTTAAAAATTTCTGGACAACTTGCCAAAGAAACTGGGAAT
ATCTCTTTAGAAATTGACTTGACCCCTAAAGGAAGAACTACAAAGGTTAATCATTTAAAACAAAGTAAATTATCCGATTA
TGTTGGAAATATGAATGTTGTTCTATTTGCTCCAGAAGATTTACAACTGATTAAAGGGACACCAGCTCTTAGACGGAAAT
TTATCGACATAGAATTAGGGCAAATTAAACCAATCTATTTATCTGATTTATCACAATATCATCATGTTTTAAAACAACGA
AATGCTTATCTAAAGGCAGCCCCAAAAATAGATGAGACTTTTTTAACTGTCTTGGATGATCAGCTAGTAGAGTTTGGTTG
CCGTGTTATACAACATCGGACAGAGTTTCTCAAAAAACTAGAACACTTTGGTCAACAAAAACATTTAGAGCTTTCAAGTA
ATTTAGAAAACTTAACCATTAAGTATTGCTCTTCTATTCCACTTTCAGATCCCAATAAATTGAAAGAATCTTTCCAAATT
GCATTAAGACAAAGCCGTAGTAGAGATTTATTTAAAAAAAATACTGGAATTGGTCCCCATCGAGATGATATCGCTTTTTA
TATTAATAACATGAATGCCACTTTTGGTAGTCAAGGACAACATCGAAGTATGGTCCTATCTCTTAAGTTGGCAGAGATTG
AACTTATGGAAACTGTGACCAAAGAAAAACCAATTCTTCTACTTGACGATGTTATGAGCGAACTTGACAACAATCGTCAA
TTGAATTTGCTTGAAACTATCTCTCAAAATATACAAACATTTATCACAACAACAACTTTAGAACATCTGAAACATTTGCC
TTCTGATATTAAAATTTTCTCAATTCATGATGGACATTTTATGGAAAATCAAGTGTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-356)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	72.346	98.082	0.71
recF	Bacillus subtilis subsp. subtilis str. 168	47.159	96.438	0.455