Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   GM240_RS08790 Genome accession   NZ_CP050509
Coordinates   1800046..1801131 (+) Length   361 a.a.
NCBI ID   WP_376181762.1    Uniprot ID   -
Organism   Peribacillus butanolivorans strain KJ40     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1795046..1806131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM240_RS08765 (GM240_08775) - 1795780..1796952 (+) 1173 WP_190271631.1 M20 family metallopeptidase -
  GM240_RS08770 (GM240_08780) - 1797161..1798258 (+) 1098 WP_190271215.1 class I SAM-dependent methyltransferase -
  GM240_RS08775 (GM240_08785) - 1798315..1798557 (-) 243 WP_053346950.1 DUF2626 domain-containing protein -
  GM240_RS08780 (GM240_08790) - 1798643..1799344 (-) 702 WP_190271216.1 metalloregulator ArsR/SmtB family transcription factor -
  GM240_RS08785 (GM240_08795) - 1799561..1799923 (+) 363 WP_098176735.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  GM240_RS08790 (GM240_08800) comGA 1800046..1801131 (+) 1086 WP_376181762.1 competence type IV pilus ATPase ComGA Machinery gene
  GM240_RS08795 (GM240_08805) comGB 1801091..1802149 (+) 1059 WP_190271217.1 competence type IV pilus assembly protein ComGB -
  GM240_RS08800 (GM240_08810) comGC 1802258..1802566 (+) 309 WP_053346945.1 competence type IV pilus major pilin ComGC -
  GM240_RS08805 (GM240_08815) comGD 1802559..1803017 (+) 459 WP_116820709.1 competence type IV pilus minor pilin ComGD -
  GM240_RS08810 (GM240_08820) - 1803004..1803342 (+) 339 WP_098176737.1 hypothetical protein -
  GM240_RS08815 (GM240_08825) comGF 1803290..1803769 (+) 480 WP_116820708.1 competence type IV pilus minor pilin ComGF -
  GM240_RS08820 (GM240_08830) comGG 1803762..1804148 (+) 387 WP_056526035.1 competence type IV pilus minor pilin ComGG -
  GM240_RS08825 (GM240_08835) - 1804451..1804651 (+) 201 WP_053346940.1 YqzE family protein -
  GM240_RS08830 (GM240_08840) - 1804740..1805537 (-) 798 WP_098176739.1 YqhG family protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 40303.09 Da        Isoelectric Point: 9.4386

>NTDB_id=433556 GM240_RS08790 WP_376181762.1 1800046..1801131(+) (comGA) [Peribacillus butanolivorans strain KJ40]
MKDLISIEKKAEKILSRAIQLSASDIHVLPRREGPLIQFRIDNKLVPQETLSFFETERLISHLKFLAAMDIGEKRRPQSG
SITVNLSKKVVGLRLSTLPTAHLESLVIRLIPQQNILPLEQLSLFPNTVQKLVALLKHSHGMLIFTGPTGSGKTTTLYSL
LHHSKEMINRNIITLEDPIENVSEKVLQVQINEKAGITYSVGLKAVLRHDPDVIMVGEIRDSETAKIAVRAALTGHLILT
TMHTRDAQGAISRLLEFGISLHEIEQSLIGVTAQRLVELTCLQCKEVCTSACQMIARNKRASVYELLYGKSLAEVLKMTK
EEKGKGTVSYRQLKDEIGKAVAMGYVDSHEFERLVYDEGKK

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=433556 GM240_RS08790 WP_376181762.1 1800046..1801131(+) (comGA) [Peribacillus butanolivorans strain KJ40]
ATGAAAGATTTGATATCGATTGAAAAGAAAGCAGAAAAAATCCTTTCCCGTGCCATTCAATTATCGGCATCGGATATTCA
CGTTTTACCACGCAGAGAGGGCCCCCTCATTCAATTCAGGATTGACAACAAACTCGTTCCTCAGGAAACATTGTCATTCT
TTGAAACGGAACGACTGATCTCCCATTTAAAGTTCCTTGCTGCTATGGATATAGGTGAGAAAAGAAGACCTCAGAGTGGT
TCAATTACCGTCAATTTATCAAAAAAAGTGGTTGGACTTCGCCTTTCCACATTACCAACTGCACATCTCGAAAGTTTGGT
CATCCGCTTGATTCCCCAGCAGAATATCCTTCCTCTAGAACAATTATCCCTATTTCCAAACACCGTTCAAAAACTAGTTG
CCCTTCTGAAACATTCCCATGGCATGCTCATATTTACCGGTCCAACTGGTAGCGGGAAAACCACGACATTATACTCCTTG
CTTCATCATTCAAAAGAGATGATAAACCGAAACATCATTACCCTCGAAGATCCCATTGAAAATGTGTCAGAAAAAGTCCT
ACAAGTTCAAATTAATGAAAAGGCAGGTATTACGTACTCTGTTGGTCTAAAAGCTGTGCTTAGGCATGATCCTGACGTGA
TTATGGTCGGGGAAATCAGGGATTCTGAAACAGCAAAAATTGCAGTTCGCGCTGCATTAACGGGTCATTTAATCCTCACG
ACCATGCATACAAGGGATGCACAAGGAGCTATCTCTAGGTTGCTCGAATTTGGAATCAGCTTGCATGAGATAGAACAGAG
CTTGATTGGTGTGACGGCTCAGCGGCTAGTTGAACTAACATGTCTGCAATGTAAAGAGGTTTGTACATCTGCTTGCCAAA
TGATTGCTCGTAATAAAAGGGCAAGTGTGTATGAACTACTATATGGAAAAAGCTTGGCAGAAGTATTGAAGATGACGAAA
GAGGAAAAAGGGAAGGGGACGGTCTCCTACCGCCAATTAAAGGATGAGATAGGAAAAGCGGTGGCAATGGGCTATGTGGA
TTCACATGAATTTGAACGGCTGGTATACGATGAAGGCAAAAAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(13-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

56.901

98.338

0.56
  pilB Haemophilus influenzae 86-028NP

39.943

96.399

0.385
  pilB Glaesserella parasuis strain SC1401

40.896

92.798

0.38
  pilB Haemophilus influenzae Rd KW20

38.218

96.399

0.368