Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   SCIM_RS08215 Genome accession   NC_018073
Coordinates   1699118..1699444 (-) Length   108 a.a.
NCBI ID   WP_014829817.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1694118..1704444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS08200 (SCIM_1487) glmS 1694632..1696446 (-) 1815 WP_003076077.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  SCIM_RS08205 (SCIM_1488) - 1696828..1698027 (-) 1200 WP_003076127.1 acetate kinase -
  SCIM_RS08210 (SCIM_1489) comGH 1698074..1699027 (-) 954 WP_003075742.1 class I SAM-dependent methyltransferase Machinery gene
  SCIM_RS08215 (SCIM_1490) comGG/cglG 1699118..1699444 (-) 327 WP_014829817.1 competence type IV pilus minor pilin ComGG Machinery gene
  SCIM_RS08220 (SCIM_1491) comGF/cglF 1699425..1699862 (-) 438 WP_003073990.1 competence type IV pilus minor pilin ComGF Machinery gene
  SCIM_RS08225 (SCIM_1492) comGE/cglE 1699846..1700139 (-) 294 WP_003073987.1 competence type IV pilus minor pilin ComGE Machinery gene
  SCIM_RS08230 (SCIM_1493) comGD 1700111..1700539 (-) 429 WP_014829819.1 competence type IV pilus minor pilin ComGD Machinery gene
  SCIM_RS08235 (SCIM_1494) comGC 1700499..1700816 (-) 318 WP_003075998.1 competence type IV pilus major pilin ComGC Machinery gene
  SCIM_RS08240 (SCIM_1495) comGB 1700813..1701835 (-) 1023 WP_172634362.1 competence type IV pilus assembly protein ComGB Machinery gene
  SCIM_RS08245 (SCIM_1497) comGA 1701777..1702718 (-) 942 WP_003073980.1 competence type IV pilus ATPase ComGA Machinery gene
  SCIM_RS08250 (SCIM_1498) - 1702787..1703152 (-) 366 WP_003075933.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12878.87 Da        Isoelectric Point: 10.6199

>NTDB_id=43355 SCIM_RS08215 WP_014829817.1 1699118..1699444(-) (comGG/cglG) [Streptococcus intermedius JTH08]
MWKQKVKAGIMLHALFMTAVFSLLLQFYLHRQTASHRNFTLNRERLQAYAMAVIANEDSRHREFDKGHVQEQQGEKELIL
TVTMKTGRHYQFRLPFEKTKLTNDNRDK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=43355 SCIM_RS08215 WP_014829817.1 1699118..1699444(-) (comGG/cglG) [Streptococcus intermedius JTH08]
GTGTGGAAACAAAAAGTTAAAGCAGGTATTATGCTCCATGCCCTTTTTATGACAGCTGTCTTTAGCTTGCTTTTGCAATT
TTATCTTCATCGTCAGACCGCTAGTCATAGAAATTTTACTCTAAACCGAGAACGCCTACAGGCGTATGCAATGGCAGTTA
TCGCAAACGAAGATTCTAGACACAGAGAATTTGATAAAGGACATGTCCAAGAGCAACAAGGTGAGAAAGAGCTCATCCTG
ACAGTAACAATGAAGACAGGTCGCCATTATCAATTTCGTCTTCCGTTTGAGAAGACCAAACTAACCAATGACAACCGAGA
CAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

46.535

93.519

0.435
  comGG/cglG Streptococcus mitis SK321

42.574

93.519

0.398
  comGG/cglG Streptococcus pneumoniae Rx1

41

92.593

0.38
  comGG/cglG Streptococcus pneumoniae D39

41

92.593

0.38
  comGG/cglG Streptococcus pneumoniae R6

41

92.593

0.38
  comGG/cglG Streptococcus pneumoniae TIGR4

41

92.593

0.38