Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   SCIM_RS07185 Genome accession   NC_018073
Coordinates   1469992..1472007 (-) Length   671 a.a.
NCBI ID   WP_003075749.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1464992..1477007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS07165 (SCIM_1285) - 1465223..1466437 (-) 1215 WP_003075849.1 pyridoxal phosphate-dependent aminotransferase -
  SCIM_RS07170 (SCIM_1286) - 1466590..1467042 (+) 453 WP_003028799.1 universal stress protein -
  SCIM_RS07175 (SCIM_1288) - 1467088..1468476 (-) 1389 WP_003074451.1 Cof-type HAD-IIB family hydrolase -
  SCIM_RS07180 (SCIM_1289) - 1468541..1469503 (+) 963 WP_003075884.1 asparaginase -
  SCIM_RS07185 (SCIM_1290) recG/mmsA 1469992..1472007 (-) 2016 WP_003075749.1 ATP-dependent DNA helicase RecG Machinery gene
  SCIM_RS07190 (SCIM_1292) alr 1472111..1473217 (-) 1107 WP_003075741.1 alanine racemase -
  SCIM_RS07195 (SCIM_1293) acpS 1473204..1473569 (-) 366 WP_009569309.1 holo-ACP synthase -
  SCIM_RS07200 (SCIM_1294) - 1473611..1474651 (-) 1041 WP_003075862.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75251.20 Da        Isoelectric Point: 6.5831

>NTDB_id=43337 SCIM_RS07185 WP_003075749.1 1469992..1472007(-) (recG/mmsA) [Streptococcus intermedius JTH08]
MNLHQPLTVLPGVGPKSAEKLSKLGIENLQDLLLYFPFRYEDFKSKNVLELEDGEKAVVSGVVVTPANVQYYGYKRNRLR
FTIKQGEVVLAVNFFNQPYLADKVALGSTIAIFGKWDKAKAGLTGMKILAQVEDDLQPVYRVAQGISQTSLVKTIKIAFD
QGLDLLLEENIPQILLGHYQLLGRSQAVRAMHFPKDLAEYKQALRRIKFEELFYFQMQLQVLKSESKNASQGLAILWRDD
LLEKKLTLLPFELTAAQKRSLDEILQDMKAPTHMNRLLQGDVGSGKTVVAGLAMYATYTAGLQSALMVPTEILAEQHFDS
LSQLFPELRIVLLTGGMKQAERKEALEAIEAGQVDMIVGTHALIQEGVSYHRLGLVIIDEQHRFGVEQRRVLREKGDNPD
VLMMTATPIPRTLAITAFGDMDVSVIDQMPAGRKPIITRWVKHEQLNVVLNWLEKELQRGAQVYVISPLIEESEALDLKN
AIALEEELKIYFGDKAQVSLLHGKMKNDEKDAIMQGFKKGKIDILVSTTVIEVGVNVPNATVMLIMDADRFGLSQLHQLR
GRVGRGDKQSYAVLVANPKTESGKKRMKIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIVEDYPILEEARK
VASQIVSIPDWRTHADWHIVALYLDKQGYLD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=43337 SCIM_RS07185 WP_003075749.1 1469992..1472007(-) (recG/mmsA) [Streptococcus intermedius JTH08]
ATGAATTTACACCAACCTTTAACGGTTCTGCCAGGTGTAGGACCAAAATCTGCCGAAAAATTGAGTAAACTTGGTATTGA
GAACCTGCAGGATTTGCTGCTCTATTTTCCATTTCGCTATGAAGACTTTAAAAGTAAAAATGTGTTAGAATTGGAAGATG
GTGAAAAGGCAGTTGTTTCAGGAGTGGTCGTTACACCGGCTAACGTGCAGTATTATGGTTATAAGCGTAATCGCCTGCGT
TTTACTATCAAGCAAGGTGAAGTGGTCCTTGCCGTCAACTTTTTTAATCAGCCTTATCTAGCAGATAAGGTAGCACTTGG
TTCAACTATTGCTATTTTTGGCAAATGGGATAAGGCCAAGGCTGGTTTGACTGGAATGAAAATTTTAGCACAAGTAGAAG
ATGATTTGCAACCAGTCTATCGGGTGGCTCAGGGGATTAGTCAAACGAGTTTAGTAAAGACTATTAAAATAGCTTTTGAC
CAAGGCCTAGACCTTCTATTGGAAGAAAATATACCTCAAATTCTGCTAGGTCATTATCAACTATTGGGACGTAGCCAAGC
TGTGCGCGCGATGCATTTTCCAAAAGATTTGGCAGAATACAAACAAGCTTTGCGTCGAATCAAGTTTGAAGAGCTTTTTT
ACTTTCAAATGCAGTTACAAGTCCTAAAGAGCGAAAGCAAGAATGCGAGTCAAGGGTTAGCTATTCTTTGGCGAGATGAT
TTATTAGAAAAAAAGCTGACACTGCTACCTTTTGAATTGACAGCTGCCCAGAAGCGGAGTCTTGATGAAATTCTACAAGA
TATGAAAGCACCAACCCATATGAACCGGCTTTTGCAGGGAGATGTGGGTAGTGGAAAGACGGTGGTTGCGGGTCTAGCTA
TGTACGCTACCTATACAGCTGGTTTGCAATCTGCTCTTATGGTACCGACTGAAATTTTAGCAGAACAGCACTTTGATAGC
TTGAGCCAACTTTTTCCTGAACTACGAATAGTTTTATTGACAGGAGGAATGAAGCAAGCAGAACGAAAAGAGGCGCTAGA
AGCTATTGAGGCTGGTCAGGTAGATATGATTGTTGGCACTCATGCTTTGATTCAAGAAGGAGTTTCCTATCATCGTTTGG
GCCTAGTAATTATTGATGAGCAGCATCGTTTTGGAGTGGAGCAGAGACGGGTTCTGCGGGAAAAGGGGGATAATCCTGAT
GTTCTCATGATGACTGCAACACCGATTCCGAGGACACTTGCGATCACTGCCTTTGGCGATATGGATGTGTCGGTTATTGA
TCAAATGCCAGCGGGGCGTAAGCCGATTATCACTCGCTGGGTCAAGCACGAGCAGCTGAATGTGGTTCTCAATTGGTTGG
AGAAAGAGCTGCAACGAGGTGCTCAGGTATATGTCATCTCTCCTTTGATTGAGGAGTCAGAAGCGCTAGATCTAAAAAAT
GCTATTGCTTTGGAAGAGGAATTAAAGATTTATTTCGGTGACAAAGCACAAGTGTCTCTGCTACATGGTAAAATGAAGAA
CGATGAAAAAGATGCCATTATGCAGGGCTTTAAGAAAGGAAAAATAGATATTCTGGTATCTACAACAGTCATTGAAGTCG
GTGTTAATGTGCCAAATGCTACGGTTATGCTAATCATGGATGCGGATCGTTTTGGGCTCAGTCAGCTCCACCAATTGCGC
GGGCGGGTAGGACGTGGAGACAAGCAATCTTATGCGGTTCTCGTGGCTAATCCCAAGACTGAATCTGGTAAGAAGCGCAT
GAAAATCATGACGGAAACGACTAACGGTTTCGTCTTAGCTGAGGAAGACCTGAAAATGCGTGGTTCTGGTGAAATCTTTG
GCACTCGGCAGTCTGGTTTACCAGAATTTCAGGTGGCGGATATTGTAGAGGATTATCCGATTTTAGAGGAAGCCAGAAAA
GTTGCTAGCCAAATTGTATCTATTCCTGATTGGCGAACGCATGCAGACTGGCATATTGTAGCACTTTATTTGGATAAGCA
GGGTTATTTGGACTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-649)

DEAD/DEAH box helicase (DEAD)

(254-411)

Helicase conserved C-terminal domain (Helicase_C)

(447-566)

RecG wedge domain (RecG_wedge)

(12-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

78.539

100

0.785
  recG/mmsA Streptococcus pneumoniae R36A

78.539

100

0.785
  recG Bacillus subtilis subsp. subtilis str. 168

49.115

100

0.496
  recG Neisseria meningitidis strain C311

39.239

100

0.399

Multiple sequence alignment