Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BCF_RS18355 Genome accession   NC_016779
Coordinates   3554428..3555666 (-) Length   412 a.a.
NCBI ID   WP_000990731.1    Uniprot ID   A0RHF2
Organism   Bacillus cereus F837/76     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3549428..3560666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCF_RS18335 (bcf_18735) spoVS 3549839..3550099 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  BCF_RS18340 (bcf_18740) - 3550248..3551042 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  BCF_RS18345 (bcf_18745) rny 3551208..3552770 (-) 1563 WP_000099773.1 ribonuclease Y -
  BCF_RS18350 (bcf_18750) recA 3553252..3554283 (-) 1032 WP_001283851.1 recombinase RecA Machinery gene
  BCF_RS18355 (bcf_18755) cinA 3554428..3555666 (-) 1239 WP_000990731.1 competence/damage-inducible protein CinA Machinery gene
  BCF_RS18360 (bcf_18760) pgsA 3555687..3556265 (-) 579 WP_001052973.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BCF_RS18365 (bcf_18770) - 3556329..3557244 (-) 916 Protein_3562 helix-turn-helix domain-containing protein -
  BCF_RS18370 (bcf_18775) - 3557266..3558051 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  BCF_RS18375 (bcf_18780) - 3558191..3558439 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  BCF_RS18380 (bcf_18785) ymfI 3558515..3559228 (-) 714 WP_000759617.1 elongation factor P 5-aminopentanone reductase -
  BCF_RS18385 (bcf_18790) yfmH 3559332..3560618 (-) 1287 WP_000411954.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45355.54 Da        Isoelectric Point: 4.8876

>NTDB_id=43337 BCF_RS18355 WP_000990731.1 3554428..3555666(-) (cinA) [Bacillus cereus F837/76]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEGRADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHDKAIELLKKKGLTLSCAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LFTDGAVSKECARYLAENVKELLEADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=43337 BCF_RS18355 WP_000990731.1 3554428..3555666(-) (cinA) [Bacillus cereus F837/76]
ATGAATGCGGAGATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGGGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAGGGACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACGAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCAATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCATGATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTATCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGTGGTGTCATTTGTTATCATAATGACGTGAAGCAGCATGTTTTACATGTACCTGAGGAAGTG
TTGTTTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAGAAGCGGATAT
CGGGATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAACCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGTGGAAGTCGCCAACAAATTAGAGAACGCTCAGCGAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAAATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0RHF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.78

99.515

0.585
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

41.005

91.748

0.376

Multiple sequence alignment