Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   BCF_RS09155 Genome accession   NC_016779
Coordinates   1751695..1752408 (+) Length   237 a.a.
NCBI ID   WP_000429323.1    Uniprot ID   -
Organism   Bacillus cereus F837/76     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1746695..1757408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCF_RS09130 (bcf_09275) - 1747419..1748045 (+) 627 WP_000432997.1 LysE family translocator -
  BCF_RS30080 - 1748278..1748424 (-) 147 Protein_1705 Tn3 family transposase -
  BCF_RS09135 (bcf_09280) - 1748582..1749499 (+) 918 WP_000539072.1 ATP-binding cassette domain-containing protein -
  BCF_RS09140 (bcf_09285) - 1749496..1750248 (+) 753 WP_000593662.1 ABC transporter permease -
  BCF_RS09145 (bcf_09290) - 1750261..1750992 (+) 732 WP_000830531.1 ABC transporter permease -
  BCF_RS09150 (bcf_09295) - 1751015..1751365 (+) 351 WP_000722584.1 YxeA family protein -
  BCF_RS09155 (bcf_09305) scnR 1751695..1752408 (+) 714 WP_000429323.1 response regulator transcription factor Regulator
  BCF_RS09160 (bcf_09310) - 1752409..1753845 (+) 1437 WP_000398538.1 sensor histidine kinase KdpD -
  BCF_RS09165 (bcf_09315) - 1754205..1755152 (+) 948 WP_000356562.1 sugar-binding transcriptional regulator -
  BCF_RS09170 (bcf_09320) deoC 1755459..1756130 (+) 672 WP_001017446.1 deoxyribose-phosphate aldolase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27129.66 Da        Isoelectric Point: 5.8194

>NTDB_id=43330 BCF_RS09155 WP_000429323.1 1751695..1752408(+) (scnR) [Bacillus cereus F837/76]
MENLKNKKILIVDDEQEIRIMIERFLRKEGFFRIYTAVDCASALSFCQVDNPDIVILDVMLPDGDGFSLLSSIRKFSSTP
VLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELVLRLMAILKRVYSSSITERLSIFRLGEQIVDLESAVVHRGQKEMPL
TAKEHAILVKLYENQGRIITNDALCQAVWGDDSYGLENTLMVHIRRIREKIELDPSKPIYLLTFRGLGYKLLVKETY

Nucleotide


Download         Length: 714 bp        

>NTDB_id=43330 BCF_RS09155 WP_000429323.1 1751695..1752408(+) (scnR) [Bacillus cereus F837/76]
ATGGAAAATCTAAAAAACAAAAAAATATTAATTGTGGACGATGAACAAGAAATCAGAATAATGATTGAAAGATTTTTAAG
AAAAGAGGGATTTTTTCGCATTTATACTGCTGTTGACTGCGCTTCTGCTCTGTCATTTTGCCAGGTAGACAATCCAGATA
TCGTAATTCTGGATGTTATGTTACCGGATGGTGACGGATTTTCTTTACTGTCTTCCATTAGGAAGTTTTCGAGCACACCG
GTTCTTTTTCTCTCTGCGCGGGGAGAGGATGAAGATCGATTGCTTGGATTGGGCTTGGGGGCAGATGATTACATGGTGAA
GCCATTTCTGCCACGTGAGCTGGTATTACGGCTCATGGCGATTTTGAAACGTGTATATTCTTCCTCGATCACAGAGCGTC
TATCTATCTTTAGATTAGGAGAACAAATCGTTGATCTTGAAAGCGCTGTTGTACACAGAGGGCAGAAAGAGATGCCATTG
ACGGCAAAGGAGCATGCCATTCTTGTAAAGCTTTATGAAAATCAAGGACGTATCATTACAAATGATGCCTTATGTCAGGC
TGTTTGGGGAGATGACAGCTACGGTCTTGAGAATACTTTGATGGTTCATATCAGGCGGATACGTGAAAAGATTGAGCTGG
ATCCTTCCAAACCAATCTATCTTCTCACCTTCAGGGGATTGGGATATAAATTGCTAGTAAAGGAGACGTATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.351

97.468

0.481
  micA Streptococcus pneumoniae Cp1015

41.667

96.203

0.401
  vicR Streptococcus mutans UA159

41.485

96.624

0.401

Multiple sequence alignment