Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SCIM_RS06435 Genome accession   NC_018073
Coordinates   1335773..1336369 (-) Length   198 a.a.
NCBI ID   WP_003072014.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1330773..1341369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS06410 (SCIM_1159) - 1331030..1331716 (-) 687 WP_037589467.1 TIGR02206 family membrane protein -
  SCIM_RS06415 (SCIM_1160) - 1331723..1332427 (-) 705 WP_003076653.1 TIGR02206 family membrane protein -
  SCIM_RS06420 (SCIM_1161) - 1332434..1332982 (-) 549 WP_003072020.1 DUF1697 domain-containing protein -
  SCIM_RS06425 (SCIM_1162) - 1332972..1334342 (-) 1371 WP_003076247.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SCIM_RS06430 (SCIM_1163) - 1334596..1335642 (-) 1047 WP_037589469.1 D-alanine--D-alanine ligase -
  SCIM_RS06435 (SCIM_1164) recR 1335773..1336369 (-) 597 WP_003072014.1 recombination mediator RecR Machinery gene
  SCIM_RS06440 (SCIM_1165) pbp2b 1336380..1338440 (-) 2061 WP_014829747.1 penicillin-binding protein PBP2B -
  SCIM_RS06445 (SCIM_1166) - 1338597..1339289 (-) 693 WP_003036126.1 phosphoglycerate mutase -
  SCIM_RS06450 (SCIM_1167) - 1339427..1339888 (-) 462 WP_003076242.1 Fur family transcriptional regulator -
  SCIM_RS06455 - 1340056..1340331 (-) 276 WP_003036014.1 HU family DNA-binding protein -
  SCIM_RS06460 (SCIM_1168) - 1340460..1341293 (-) 834 WP_003076577.1 DegV family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21650.70 Da        Isoelectric Point: 4.3571

>NTDB_id=43330 SCIM_RS06435 WP_003072014.1 1335773..1336369(-) (recR) [Streptococcus intermedius JTH08]
MLYPTPLAKLIESFSKLPGIGIKSATRLAFYTISMSDDDVNEFAKNLLAAKRELTYCSICGNLTDDNPCAICTDETRDQS
TILVVEDSRDVSAMENIQEYHGLYHVLQGLISPMNGIGPDDINLKSLITRLMDSEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=43330 SCIM_RS06435 WP_003072014.1 1335773..1336369(-) (recR) [Streptococcus intermedius JTH08]
ATGCTTTATCCAACACCGCTTGCAAAATTGATTGAAAGTTTTTCAAAATTACCAGGAATTGGCATCAAATCAGCAACACG
TTTGGCATTTTATACCATTAGCATGAGTGATGATGATGTTAATGAATTTGCTAAAAATTTACTTGCAGCAAAACGTGAGT
TAACATATTGCTCTATTTGTGGGAATTTAACGGATGACAATCCCTGTGCTATCTGTACCGATGAGACTCGTGACCAATCG
ACTATTTTAGTTGTAGAAGATAGCCGAGATGTCTCTGCTATGGAAAACATTCAAGAATATCATGGCTTGTACCATGTTTT
GCAGGGATTGATTTCTCCTATGAATGGTATTGGTCCAGATGACATCAATCTGAAAAGTTTAATCACACGATTGATGGATA
GTGAAGTGACAGAAGTGATTGTAGCAACTAATGCAACAGCAGATGGAGAAGCAACTTCCATGTATATTTCACGAGTGTTA
AAGCCAGCTGGTATCAAAGTGACACGTCTCGCTCGAGGATTAGCAGTTGGTTCTGATATTGAATATGCAGATGAAGTGAC
TTTGCTTCGAGCTATTGAGAATCGTACGGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

89.394

100

0.894
  recR Bacillus subtilis subsp. subtilis str. 168

61.616

100

0.616
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49

Multiple sequence alignment