Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   HB764_RS04785 Genome accession   NZ_CP050478
Coordinates   1012639..1014897 (+) Length   752 a.a.
NCBI ID   WP_255957802.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC011     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1007639..1019897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB764_RS04760 (HB764_04740) - 1007930..1008499 (-) 570 WP_038891579.1 PilZ domain-containing protein -
  HB764_RS04765 (HB764_04745) lolC 1008764..1009972 (+) 1209 WP_255957800.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  HB764_RS04770 (HB764_04750) lolD 1009965..1010672 (+) 708 WP_045373222.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  HB764_RS04775 (HB764_04755) lolE 1010675..1011919 (+) 1245 WP_255957801.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  HB764_RS04780 (HB764_04760) - 1012121..1012630 (-) 510 WP_005431694.1 DUF2062 domain-containing protein -
  HB764_RS04785 (HB764_04765) comEC 1012639..1014897 (+) 2259 WP_255957802.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HB764_RS04790 (HB764_04770) msbA 1014929..1016680 (+) 1752 WP_255957803.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  HB764_RS04795 (HB764_04775) lpxK 1016686..1017693 (+) 1008 WP_255957804.1 tetraacyldisaccharide 4'-kinase -
  HB764_RS04800 (HB764_04780) - 1017674..1017853 (+) 180 WP_005378451.1 Trm112 family protein -
  HB764_RS04805 (HB764_04785) kdsB 1017853..1018611 (+) 759 WP_255957805.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84297.58 Da        Isoelectric Point: 9.7287

>NTDB_id=433198 HB764_RS04785 WP_255957802.1 1012639..1014897(+) (comEC) [Vibrio campbellii strain LJC011]
MTLLEKSLTLALFVASVISSAWWPTMPDWRWLLLGIIATGSIIKLRRGLLSIGVIWGFMVVIIHGNVMEHQRQALFRAGV
NITINGKVDSPFTQISHGYEGIAQINQVNSQNLLPFLKPKIRLITAFPLPVNSEFTTQVTIKPILGLKNEAGFDAEKQAV
GKGIVARAVTPDDAKWLIRTHSSFRQQIITAVDTHIAELDHFPLISALAFSDRSLLAKQDWQSLRDSGLLHLVSISGLHI
GMAFAFGMSLGFVIRLIIPKFVHFPSVVGLLAALVYAWLADFSLPTTRAFSVCVIYLVLKAALVHWSPWRVLLLAVSIQL
FIEPFASFTMSFWLSYLSVVAVLLAVNVVQQRRGNWQTKLSSLLKIQLVLTLLIVPISGAFFSGTSLVSIAYNLVFIPWF
GFLVVPLMFLALIVTPISFQLAGMLWQLVDWVLLPLTWSLQFAVESWHFVSLPLTLTILAVAICGLLRRFLNRGSLVTLV
MLVTGVALFYERTTNSWRVDVLDVGHGLAVLIEKHGKVALYDTGKAWNSGSIAQQVISPVLHRRGFGTIDMFIISHADSD
HAGGRQYIEQHFSPAQNFSSQNYANYQSCIAGERWYWQALYFEVLWPPKQVNRAYNPHSCVVRVVDKESGFKLLLTGDIE
AVSEWILMREPNKLGSDVMLVPHHGSKSSSNPKFVQIVSPTLAIASLAKSNQWGMPAENVLSAYQEANAYWLDTGNHGQV
SVFIERDNWYFEAKRSETFEPWYRQMLRKRVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=433198 HB764_RS04785 WP_255957802.1 1012639..1014897(+) (comEC) [Vibrio campbellii strain LJC011]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCGAGCGTTATATCGTCTGCGTGGTGGCCGACGATGCC
TGATTGGCGATGGTTGCTGCTGGGAATAATTGCCACTGGCTCGATTATCAAATTACGTCGTGGCTTATTGAGCATAGGCG
TAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCGAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATCAATCA
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGATTGATAACCGCTTTCCCACTGCCCGTTAACAGTG
AGTTCACTACTCAGGTGACGATCAAACCGATTCTGGGTTTGAAGAATGAGGCGGGGTTTGATGCGGAAAAGCAAGCGGTA
GGTAAGGGTATTGTCGCTAGAGCTGTCACACCTGATGACGCGAAATGGTTGATTCGTACACACTCTTCATTTCGACAGCA
AATCATTACGGCCGTTGATACTCATATTGCTGAACTTGACCATTTCCCTTTAATCAGTGCATTAGCGTTTAGCGACCGCT
CCCTGCTTGCTAAACAGGATTGGCAGTCTCTGCGAGATAGCGGGCTGCTGCATTTGGTCTCAATCTCTGGTTTGCATATT
GGAATGGCGTTTGCTTTTGGCATGAGTTTGGGCTTTGTCATACGGCTTATAATCCCAAAATTTGTTCACTTTCCTTCCGT
TGTCGGTTTATTGGCAGCGCTTGTTTATGCGTGGTTGGCCGATTTTTCTTTACCTACAACCCGTGCTTTTTCGGTTTGTG
TCATTTATCTCGTACTTAAAGCGGCTTTGGTTCATTGGAGCCCTTGGCGAGTGTTACTGCTCGCTGTCTCGATACAGCTT
TTCATCGAGCCTTTTGCTTCATTCACGATGAGCTTCTGGTTGTCTTATCTGTCCGTGGTTGCCGTGCTTTTAGCCGTGAA
TGTGGTTCAACAGCGACGCGGCAATTGGCAAACGAAGCTGAGTTCACTACTAAAAATACAGTTAGTACTTACTTTGCTTA
TCGTTCCAATCAGCGGTGCGTTTTTCTCTGGAACAAGTTTGGTATCCATCGCTTATAACCTAGTTTTCATTCCCTGGTTT
GGTTTTTTGGTCGTCCCTTTGATGTTCCTAGCGCTGATTGTAACTCCAATTTCTTTTCAGTTGGCTGGTATGCTTTGGCA
ACTGGTGGATTGGGTGTTGTTGCCACTGACATGGTCATTACAGTTTGCGGTCGAGAGTTGGCATTTTGTAAGTTTGCCTT
TGACCTTAACGATACTCGCAGTTGCCATCTGTGGATTATTGAGACGTTTTTTGAATCGGGGCTCGCTCGTTACGTTAGTC
ATGCTAGTGACGGGTGTCGCCCTATTTTATGAGCGTACAACAAATTCTTGGCGAGTGGACGTGTTAGATGTAGGGCATGG
CCTTGCGGTATTAATTGAGAAGCATGGAAAGGTGGCGCTTTATGACACAGGCAAAGCTTGGAACTCAGGGAGCATAGCTC
AGCAAGTTATCTCTCCTGTATTACATCGCAGAGGTTTTGGCACCATTGATATGTTCATTATCAGTCATGCTGATTCGGAT
CATGCTGGAGGTAGGCAATATATAGAGCAGCACTTTTCGCCAGCGCAGAACTTCAGCAGTCAAAACTACGCTAACTACCA
ATCTTGTATTGCGGGTGAACGCTGGTATTGGCAGGCGCTTTATTTTGAAGTCCTATGGCCACCTAAGCAGGTAAACCGTG
CTTATAATCCTCATTCGTGTGTTGTTCGAGTTGTGGATAAGGAATCGGGTTTTAAATTGCTTTTGACTGGCGATATTGAA
GCCGTCAGTGAGTGGATACTTATGCGTGAACCCAACAAGCTAGGGAGTGATGTTATGTTGGTTCCTCATCATGGTAGCAA
GAGCTCTTCGAATCCAAAATTTGTTCAAATTGTCTCTCCAACCTTGGCGATAGCCTCGTTAGCAAAAAGTAATCAATGGG
GCATGCCTGCTGAAAATGTTTTATCGGCTTATCAGGAAGCAAATGCCTACTGGCTGGATACGGGAAACCATGGGCAGGTA
TCGGTGTTTATTGAGCGAGACAATTGGTACTTTGAAGCTAAACGTAGTGAGACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGAGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-467)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

98.537

100

0.985
  comEC Vibrio parahaemolyticus RIMD 2210633

66.356

100

0.664
  comEC Vibrio cholerae strain A1552

41.09

100

0.411