Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   HB763_RS09815 Genome accession   NZ_CP050475
Coordinates   2100043..2102301 (+) Length   752 a.a.
NCBI ID   WP_255983937.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC012     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2095043..2107301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB763_RS09790 (HB763_09810) - 2095329..2095898 (-) 570 WP_255983934.1 PilZ domain-containing protein -
  HB763_RS09795 (HB763_09815) lolC 2096163..2097371 (+) 1209 WP_255983935.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  HB763_RS09800 (HB763_09820) lolD 2097364..2098071 (+) 708 WP_045373222.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  HB763_RS09805 (HB763_09825) lolE 2098074..2099318 (+) 1245 WP_255983936.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  HB763_RS09810 (HB763_09830) - 2099525..2100034 (-) 510 WP_005431694.1 DUF2062 domain-containing protein -
  HB763_RS09815 (HB763_09835) comEC 2100043..2102301 (+) 2259 WP_255983937.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HB763_RS09820 (HB763_09840) msbA 2102333..2104084 (+) 1752 WP_255983938.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  HB763_RS09825 (HB763_09845) lpxK 2104090..2105097 (+) 1008 WP_255983939.1 tetraacyldisaccharide 4'-kinase -
  HB763_RS09830 (HB763_09850) - 2105078..2105257 (+) 180 WP_005378451.1 Trm112 family protein -
  HB763_RS09835 (HB763_09855) kdsB 2105257..2106015 (+) 759 WP_081233782.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84168.47 Da        Isoelectric Point: 9.9402

>NTDB_id=433170 HB763_RS09815 WP_255983937.1 2100043..2102301(+) (comEC) [Vibrio campbellii strain LJC012]
MTLLEKSLTLALFVASVISSAWWPTMPGWRWLLLGIIATGSIIKLRRGLLSIGVIWGFMVVIIHGNVMEHQRQALFRSGV
NITINGKVDSPFTQISHGYEGIAQINQVNSQNLLPFLKPKIRLITAFPLPVNSEFTTQVTIKPILGLKNEAGFDAEKQAI
GKGIVARAVTPDDAKWLIRTHSSFRQQIITAVDTHIAELDHFPLISALAFSDRSLLAKQDWQSLRDSGLLHLVSISGLHI
GMAFAFGMSLGFVIRLLFPKFVHLPSAVGLLAALVYAWLADFSLPTTRAFSVCVIYLVLKAALVHWSPWRVLLLAVSIQL
FIEPFASFTMSFWLSYLSVVAVLLAVNVVQQRRGNWQTKLSSLLKIQLVLTLLIVPISGAFFSGTSLVSIAYNLVFIPWF
GFLVVPLMFLALIVTPISFKLAGMLWQLVDWVLLPLTWSLQFAVGSWHFVSLPLTLTILAVAICGLLRRFLNRGSFVTLV
ILVTSVALFYERTTNSWRVDVLDVGHGLAVLIEKHGKVTLYDTGKAWNSGSIAQQVISPILHRRGFGTIDMFIISHADSD
HAGGRQYMEQHFSPAQKFSSQNYANYQSCIAGERWYWQALYFEVLWPPKQVNRAYNPHSCVVRVVDKESGFKLLLTGDIE
AVSEWILMREPNKLESDVMLVPHHGSKSSSNPKFVQTVSPTLAIASLAKSNQWGMPAENVLSAYQAANAHWLDTGNHGQV
SVFIERDNWYFEAKRSETFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=433170 HB763_RS09815 WP_255983937.1 2100043..2102301(+) (comEC) [Vibrio campbellii strain LJC012]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCGAGCGTTATATCGTCTGCGTGGTGGCCGACGATGCC
TGGTTGGCGATGGTTGCTGCTGGGAATAATTGCCACTGGCTCGATTATCAAATTACGTCGTGGCTTATTGAGCATAGGCG
TAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCGATCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATCAATCA
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGATTGATAACCGCTTTCCCACTGCCCGTTAACAGTG
AGTTCACTACTCAGGTGACGATCAAACCGATTCTGGGTTTGAAGAATGAGGCGGGGTTTGATGCGGAAAAGCAAGCGATA
GGTAAGGGTATTGTCGCTAGAGCTGTCACACCTGATGACGCGAAATGGTTGATTCGTACACACTCTTCATTTCGACAGCA
AATCATTACGGCCGTTGATACTCATATTGCTGAACTTGACCATTTCCCTTTAATCAGTGCATTAGCGTTTAGTGACCGCT
CCCTGCTTGCTAAACAGGATTGGCAGTCTCTGCGAGATAGCGGGCTGCTGCATTTGGTCTCAATCTCTGGTTTGCATATT
GGAATGGCGTTTGCGTTTGGCATGAGTTTGGGTTTTGTCATTCGGCTTCTATTCCCCAAATTTGTTCACCTTCCTTCCGC
TGTCGGTTTATTGGCAGCGCTCGTTTATGCGTGGTTGGCCGATTTTTCTTTACCTACAACCCGTGCTTTCTCGGTTTGTG
TCATTTATCTCGTACTTAAAGCGGCGTTGGTTCATTGGAGCCCTTGGCGAGTGTTATTGCTCGCAGTCTCGATACAGCTT
TTCATCGAACCTTTTGCTTCATTCACGATGAGCTTCTGGTTGTCTTATCTGTCCGTGGTTGCCGTGCTTTTAGCCGTGAA
TGTGGTTCAACAGCGACGCGGCAATTGGCAAACGAAGCTGAGTTCACTACTAAAAATACAGTTAGTGCTTACTTTGCTTA
TCGTGCCAATCAGCGGTGCGTTTTTCTCTGGAACAAGTTTGGTATCCATCGCTTATAACCTAGTTTTCATTCCTTGGTTT
GGTTTTTTGGTCGTCCCTTTGATGTTCCTAGCGCTGATTGTAACCCCAATTTCTTTTAAGTTGGCTGGTATGCTTTGGCA
ACTGGTGGATTGGGTGTTGTTGCCACTGACATGGTCATTACAGTTTGCGGTCGGGAGTTGGCATTTTGTAAGTTTGCCTT
TGACCTTAACGATACTCGCAGTTGCCATCTGTGGATTATTGAGACGTTTTTTGAATCGGGGCTCGTTCGTTACGTTAGTC
ATTCTAGTAACGAGTGTCGCCCTATTTTATGAGCGTACAACGAATTCTTGGCGAGTGGACGTGTTAGATGTAGGGCACGG
CCTTGCGGTATTAATTGAGAAGCATGGAAAGGTGACGCTTTACGACACAGGCAAAGCTTGGAACTCAGGGAGCATCGCTC
AGCAAGTTATCTCTCCTATATTACATCGCAGAGGTTTTGGCACCATTGATATGTTCATTATCAGTCATGCTGATTCGGAT
CATGCAGGAGGTAGGCAGTATATGGAGCAGCACTTTTCGCCAGCGCAGAAATTCAGCAGTCAAAACTACGCTAACTACCA
ATCTTGTATTGCGGGTGAACGCTGGTATTGGCAGGCGCTTTATTTTGAAGTCTTATGGCCACCTAAGCAGGTAAACCGTG
CTTATAATCCTCATTCGTGTGTTGTTCGAGTTGTTGATAAGGAATCGGGTTTTAAATTGCTTTTGACTGGCGATATTGAA
GCCGTCAGTGAGTGGATACTTATGCGTGAACCCAACAAGCTAGAGAGTGATGTTATGCTTGTTCCTCATCATGGTAGCAA
GAGCTCTTCGAATCCAAAATTTGTTCAAACTGTCTCTCCAACCTTGGCGATAGCCTCGTTAGCAAAAAGTAATCAGTGGG
GCATGCCTGCTGAAAATGTTTTATCGGCTTATCAGGCAGCAAATGCCCACTGGCTGGATACGGGAAATCATGGGCAGGTA
TCGGTGTTCATTGAGCGAGACAATTGGTATTTTGAAGCTAAACGTAGTGAGACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

97.34

100

0.973
  comEC Vibrio parahaemolyticus RIMD 2210633

65.957

100

0.66
  comEC Vibrio cholerae strain A1552

40.957

100

0.41