Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   HB762_RS08315 Genome accession   NZ_CP050470
Coordinates   1756388..1758646 (-) Length   752 a.a.
NCBI ID   WP_255897880.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC013     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1751388..1763646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB762_RS08295 (HB762_08215) kdsB 1752674..1753432 (-) 759 WP_255897874.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HB762_RS08300 (HB762_08220) - 1753432..1753611 (-) 180 WP_005378451.1 Trm112 family protein -
  HB762_RS08305 (HB762_08225) lpxK 1753592..1754599 (-) 1008 WP_255897876.1 tetraacyldisaccharide 4'-kinase -
  HB762_RS08310 (HB762_08230) msbA 1754605..1756356 (-) 1752 WP_255897878.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  HB762_RS08315 (HB762_08235) comEC 1756388..1758646 (-) 2259 WP_255897880.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HB762_RS08320 (HB762_08240) - 1758655..1759164 (+) 510 WP_005431694.1 DUF2062 domain-containing protein -
  HB762_RS08325 (HB762_08245) lolE 1759366..1760610 (-) 1245 WP_255897881.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  HB762_RS08330 (HB762_08250) lolD 1760613..1761320 (-) 708 WP_255897882.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  HB762_RS08335 (HB762_08255) lolC 1761313..1762521 (-) 1209 WP_041853212.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  HB762_RS08340 (HB762_08260) - 1762786..1763355 (+) 570 WP_255897883.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84186.52 Da        Isoelectric Point: 9.9400

>NTDB_id=433095 HB762_RS08315 WP_255897880.1 1756388..1758646(-) (comEC) [Vibrio campbellii strain LJC013]
MTLLEKSLTLALFVASVISSAWWPTMPDWRWLLLGIIATGSIIKLRRGLLSIGVIWGFMVVIIHGNVMEHQRQALFRAGV
NITINGKVDSPFTQISHGYEGIAQINQVNSQNLLPFLKPKIRLITAFPLPVNSEFTTQVTIKPILGLKNEAGFDAEKQAV
GKGIVARAVTPDDAKWLIRTHSSFRQQIITAVDTHIAELDHFPLISALAFSDRSLLAKQDWQSLRDSGLLHLVSISGLHI
GMAFAFGMSLGFVIRLIIPKFVHFPSVVGLLAALVYAWLADFSLPTTRAFSVCVIYLVLKAALVHWSPWRVLLLAVSIQL
FIEPFASFTMSFWLSYLSVVAVLLAVNVVQQRRGNWQTKLSSLLKIQLVLTLLIVPISGAFFSGTSLVSIAYNLVFIPWF
GFLVVPLMFLALIVTPISFKLAGMLWQLVDWVLLPLTWSLQFAVGSWHFVSLPLTLTILAVAICGLLRRFLNRGSFVTLV
ILVTSVALFYERTTNSWRVDVLDVGHGLAVLIEKRGKVALYDTGKAWNSGSIAQQVISPILHRRGFGTIDMFIISHADSD
HAGGRQYMEQHFSPAQKFSSQNYANYQSCIAGERWYWQALYFEVLWPPKQVNRAYNPHSCVVRVVDKESGFKLLLTGDIE
AVSEWILMREPNKLESDVMLVPHHGSKSSSNPKFVQTVSPTLAIASLAKSNQWGMPAENVLSAYQAASAHWLDTGNHGQV
SVFIERDNWYFEAKRSETFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=433095 HB762_RS08315 WP_255897880.1 1756388..1758646(-) (comEC) [Vibrio campbellii strain LJC013]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCGAGCGTTATATCGTCTGCGTGGTGGCCGACGATGCC
TGATTGGCGATGGTTGCTGCTGGGAATAATTGCCACTGGCTCGATTATCAAATTACGTCGTGGCTTATTGAGCATAGGCG
TAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCGAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATCAATCA
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGATTGATAACCGCTTTCCCACTGCCCGTTAACAGTG
AGTTCACTACTCAGGTGACGATCAAACCGATTCTGGGTTTGAAGAATGAGGCGGGGTTTGATGCGGAAAAGCAAGCGGTA
GGTAAGGGTATTGTCGCTAGAGCTGTCACACCTGATGACGCGAAATGGTTGATTCGTACACACTCTTCATTTCGACAGCA
AATCATTACGGCCGTTGATACTCATATTGCTGAACTTGACCATTTCCCTTTAATCAGTGCATTAGCGTTTAGCGACCGCT
CCCTGCTTGCTAAACAGGATTGGCAGTCTCTGCGAGATAGCGGGCTGCTGCATTTGGTCTCGATCTCTGGTTTGCATATT
GGAATGGCGTTTGCTTTTGGCATGAGTTTGGGCTTTGTCATACGGCTTATAATCCCAAAATTCGTTCACTTTCCTTCCGT
TGTCGGTTTATTGGCAGCGCTTGTTTATGCGTGGTTGGCCGATTTTTCTTTACCTACAACCCGTGCTTTTTCGGTTTGTG
TCATTTATCTCGTACTTAAAGCGGCTTTGGTTCATTGGAGCCCTTGGCGAGTGTTACTGCTCGCAGTCTCGATACAGCTT
TTCATCGAACCTTTTGCTTCATTCACAATGAGCTTCTGGTTGTCTTATCTGTCCGTGGTTGCCGTGCTTTTAGCCGTGAA
TGTGGTTCAACAGCGACGCGGCAATTGGCAAACGAAGCTGAGTTCACTACTAAAAATACAGTTAGTGCTTACTTTGCTTA
TCGTGCCAATCAGCGGTGCGTTTTTCTCTGGAACAAGTTTGGTATCCATCGCTTATAACCTAGTTTTCATTCCTTGGTTT
GGTTTTTTGGTCGTCCCTTTGATGTTCCTAGCGCTGATTGTAACCCCAATTTCTTTTAAGTTGGCTGGTATGCTTTGGCA
ACTGGTGGATTGGGTGTTGTTGCCACTGACATGGTCATTACAGTTTGCGGTCGGGAGTTGGCATTTTGTAAGTTTGCCTT
TGACCTTAACGATACTCGCAGTTGCCATCTGTGGATTATTGAGACGTTTTTTGAATCGGGGCTCGTTCGTTACGTTAGTC
ATTCTAGTAACGAGTGTCGCCCTATTTTATGAGCGTACAACGAATTCTTGGCGAGTGGACGTGTTAGATGTAGGGCACGG
CCTTGCGGTATTAATTGAGAAGCGTGGAAAGGTGGCGCTTTACGACACAGGCAAAGCTTGGAACTCAGGGAGCATCGCTC
AGCAAGTTATCTCTCCTATATTACATCGCAGAGGTTTTGGCACCATTGATATGTTCATTATCAGTCATGCTGATTCGGAT
CATGCAGGAGGTAGGCAGTATATGGAGCAGCACTTTTCGCCAGCGCAGAAATTCAGCAGTCAAAACTACGCTAACTACCA
ATCTTGTATTGCGGGTGAACGCTGGTATTGGCAGGCGCTTTATTTTGAAGTCTTATGGCCACCTAAGCAGGTAAACCGTG
CTTATAATCCTCATTCGTGTGTTGTTCGAGTTGTTGATAAGGAATCGGGTTTTAAATTGCTTTTGACTGGCGATATTGAA
GCCGTCAGTGAGTGGATACTTATGCGTGAACCCAACAAGCTAGAGAGTGATGTTATGCTTGTTCCTCATCATGGTAGCAA
GAGCTCTTCGAATCCAAAATTTGTTCAAACTGTCTCTCCAACCTTGGCGATAGCCTCGTTAGCAAAAAGTAATCAATGGG
GCATGCCTGCTGAAAATGTTTTATCGGCTTATCAGGCAGCAAGTGCCCACTGGCTGGATACGGGAAATCATGGGCAGGTA
TCGGTGTTTATTGAGCGAGACAATTGGTACTTTGAAGCTAAACGTAGTGAGACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-671)

Competence protein (Competence)

(208-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

97.074

100

0.971
  comEC Vibrio parahaemolyticus RIMD 2210633

66.223

100

0.662
  comEC Vibrio cholerae strain A1552

41.223

100

0.412