Detailed information
Bioinformatically predicted
Overview
| Name | comEC | Type | Machinery gene |
| Locus tag | HB760_RS04550 | Genome accession | NZ_CP050463 |
| Coordinates | 972444..974702 (+) | Length | 752 a.a. |
| NCBI ID | WP_256113596.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain LJC015 | ||
| Function | ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 969770..1007556 | 972444..974702 | within | 0 |
Gene organization within MGE regions
Location: 969770..1007556
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HB760_RS04535 (HB760_04505) | lolD | 969770..970477 (+) | 708 | WP_045373222.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| HB760_RS04540 (HB760_04510) | lolE | 970480..971724 (+) | 1245 | WP_256113595.1 | lipoprotein-releasing ABC transporter permease subunit LolE | - |
| HB760_RS04545 (HB760_04515) | - | 971926..972435 (-) | 510 | WP_005431694.1 | DUF2062 domain-containing protein | - |
| HB760_RS04550 (HB760_04520) | comEC | 972444..974702 (+) | 2259 | WP_256113596.1 | DNA internalization-related competence protein ComEC/Rec2 | Machinery gene |
| HB760_RS04555 (HB760_04525) | msbA | 974734..976485 (+) | 1752 | WP_255897878.1 | lipid A ABC transporter ATP-binding protein/permease MsbA | - |
| HB760_RS04560 (HB760_04530) | lpxK | 976491..977498 (+) | 1008 | WP_255897876.1 | tetraacyldisaccharide 4'-kinase | - |
| HB760_RS04565 (HB760_04535) | - | 977479..977658 (+) | 180 | WP_005378451.1 | Trm112 family protein | - |
| HB760_RS04570 (HB760_04540) | kdsB | 977658..978416 (+) | 759 | WP_255897874.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| HB760_RS04575 (HB760_04545) | - | 978498..980057 (-) | 1560 | WP_005431687.1 | SpoVR family protein | - |
| HB760_RS04580 (HB760_04550) | - | 980069..981340 (-) | 1272 | WP_005531977.1 | YeaH/YhbH family protein | - |
| HB760_RS04585 (HB760_04555) | - | 981386..983320 (-) | 1935 | WP_005431706.1 | PrkA family serine protein kinase | - |
| HB760_RS04590 (HB760_04560) | - | 983810..984310 (-) | 501 | WP_255897872.1 | YfbU family protein | - |
| HB760_RS04595 (HB760_04565) | - | 984469..985134 (-) | 666 | WP_255897870.1 | energy-coupling factor ABC transporter permease | - |
| HB760_RS04600 (HB760_04570) | pflA | 985326..986066 (-) | 741 | WP_005534013.1 | pyruvate formate lyase 1-activating protein | - |
| HB760_RS04605 (HB760_04575) | - | 986211..987188 (-) | 978 | WP_255897868.1 | lipid A deacylase LpxR family protein | - |
| HB760_RS04610 (HB760_04580) | pflB | 987341..989617 (-) | 2277 | WP_255897866.1 | formate C-acetyltransferase | - |
| HB760_RS04615 (HB760_04585) | - | 989923..991470 (-) | 1548 | WP_010649073.1 | DUF3360 family protein | - |
| HB760_RS04620 (HB760_04590) | - | 991929..993404 (+) | 1476 | WP_255897864.1 | 54K polar flagellar sheath protein A | - |
| HB760_RS04625 (HB760_04595) | - | 993663..994433 (+) | 771 | WP_005446708.1 | ABC transporter ATP-binding protein | - |
| HB760_RS04630 (HB760_04600) | - | 994514..995284 (+) | 771 | WP_005430696.1 | ABC transporter substrate-binding protein | - |
| HB760_RS04635 (HB760_04605) | - | 995366..996106 (+) | 741 | WP_005534021.1 | ABC transporter permease | - |
| HB760_RS04640 (HB760_04610) | - | 996110..996787 (+) | 678 | WP_005534023.1 | ABC transporter permease | - |
| HB760_RS04645 (HB760_04615) | xthA | 996867..997673 (-) | 807 | WP_045373201.1 | exodeoxyribonuclease III | - |
| HB760_RS04650 (HB760_04620) | rsmS | 997793..997957 (-) | 165 | WP_005431885.1 | pleiotropic regulatory protein RsmS | - |
| HB760_RS04655 (HB760_04625) | - | 997957..998502 (-) | 546 | WP_256113597.1 | primosomal replication protein | - |
| HB760_RS04660 (HB760_04630) | - | 998499..999284 (-) | 786 | WP_038889197.1 | TSUP family transporter | - |
| HB760_RS04665 (HB760_04635) | dinG | 999299..1001374 (-) | 2076 | WP_256113598.1 | ATP-dependent DNA helicase DinG | - |
| HB760_RS04670 (HB760_04640) | - | 1001888..1002892 (+) | 1005 | WP_005534028.1 | porin | - |
| HB760_RS04675 (HB760_04645) | - | 1003156..1003821 (+) | 666 | WP_005534029.1 | DUF2057 domain-containing protein | - |
| HB760_RS04680 (HB760_04650) | - | 1003892..1004596 (-) | 705 | WP_255897858.1 | pseudouridine synthase | - |
| HB760_RS04685 (HB760_04655) | - | 1004968..1007193 (+) | 2226 | WP_255897856.1 | NADP-dependent isocitrate dehydrogenase | - |
| HB760_RS04690 (HB760_04660) | cspD | 1007338..1007556 (-) | 219 | WP_005427548.1 | cold shock domain-containing protein CspD | - |
Sequence
Protein
Download Length: 752 a.a. Molecular weight: 84181.50 Da Isoelectric Point: 9.8112
>NTDB_id=433001 HB760_RS04550 WP_256113596.1 972444..974702(+) (comEC) [Vibrio campbellii strain LJC015]
MTLLEKSLTLALFVASVISSAWWPTMPDWRWLLLGIIATGSIIKLRRGLLSIGVIWGFMVVIIHGNVMEHQRQALFRAGV
NITINGKVDSPFTQISHGYEGIAQINQVNSQNLLPFLKPKIRLITAFPLPVNSEFTTQVTIKPILGLKNEAGVDAEKQAV
GKGIVARAVTPDDAKWLIRTHSSFRQQIIAAVDTHIAELDHFPLISALAFSDRSLLAKEDWQSLRDSGLLHLVSISGLHI
GMAFAFGMSLGFVIRLIIPKFVHFPSVVGLLAALVYAWLADFSLPTTRAFSVCVIYLVLKAALVHWSPWRVLLLAVSIQL
FIEPFASFTMSFWLSYLSVVAVLLAVNVVQQRRGNWQTKLSSLLKIQLVLTLLIVPISGAFFSGTSLVSIAYNLVFIPWF
GFLVVPLMFLALIVTPISFKLAGMLWQLVDWVLLPLTWSLQFAVGSWHFVSLPLTLTILAVAICELLRRFLNRGSFVTLV
ILVTSVALFYERTTNSWRVDVLDVGHGLAVLIEKRGKVALYDTGKAWNSGSIAQQVISPILHRRGFGTIDMFIISHADSD
HAGGRQYMEQHFSPAQKFSSQNYANYQSCIAGERWYWQALYFEVLWPPKQVNRAYNPHSCVVRVVDKESGFKLLLTGDIE
AVSEWILMREPNKLESDVMLVPHHGSKSSSNPKFVQTVSPTLAIASLAKSNQWGMPAENVLSAYQAASAHWLDTGNHGQV
SVFIERDNWYFEAKRSETFEPWYRQMLRKGVE
MTLLEKSLTLALFVASVISSAWWPTMPDWRWLLLGIIATGSIIKLRRGLLSIGVIWGFMVVIIHGNVMEHQRQALFRAGV
NITINGKVDSPFTQISHGYEGIAQINQVNSQNLLPFLKPKIRLITAFPLPVNSEFTTQVTIKPILGLKNEAGVDAEKQAV
GKGIVARAVTPDDAKWLIRTHSSFRQQIIAAVDTHIAELDHFPLISALAFSDRSLLAKEDWQSLRDSGLLHLVSISGLHI
GMAFAFGMSLGFVIRLIIPKFVHFPSVVGLLAALVYAWLADFSLPTTRAFSVCVIYLVLKAALVHWSPWRVLLLAVSIQL
FIEPFASFTMSFWLSYLSVVAVLLAVNVVQQRRGNWQTKLSSLLKIQLVLTLLIVPISGAFFSGTSLVSIAYNLVFIPWF
GFLVVPLMFLALIVTPISFKLAGMLWQLVDWVLLPLTWSLQFAVGSWHFVSLPLTLTILAVAICELLRRFLNRGSFVTLV
ILVTSVALFYERTTNSWRVDVLDVGHGLAVLIEKRGKVALYDTGKAWNSGSIAQQVISPILHRRGFGTIDMFIISHADSD
HAGGRQYMEQHFSPAQKFSSQNYANYQSCIAGERWYWQALYFEVLWPPKQVNRAYNPHSCVVRVVDKESGFKLLLTGDIE
AVSEWILMREPNKLESDVMLVPHHGSKSSSNPKFVQTVSPTLAIASLAKSNQWGMPAENVLSAYQAASAHWLDTGNHGQV
SVFIERDNWYFEAKRSETFEPWYRQMLRKGVE
Nucleotide
Download Length: 2259 bp
>NTDB_id=433001 HB760_RS04550 WP_256113596.1 972444..974702(+) (comEC) [Vibrio campbellii strain LJC015]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCGAGCGTTATATCGTCTGCGTGGTGGCCGACGATGCC
TGATTGGCGATGGTTGCTGCTGGGAATAATTGCCACTGGCTCGATTATCAAATTACGTCGTGGCTTATTGAGCATAGGCG
TAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCGAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATCAATCA
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGATTGATAACCGCTTTCCCACTGCCCGTTAACAGTG
AGTTCACTACTCAGGTGACGATCAAACCGATTCTGGGTTTGAAGAATGAGGCGGGGGTTGATGCGGAAAAGCAAGCGGTA
GGTAAGGGTATTGTCGCTAGAGCTGTCACACCTGATGACGCGAAATGGTTGATTCGTACACACTCTTCATTTCGACAGCA
AATCATTGCGGCCGTTGATACTCATATTGCTGAACTTGACCATTTCCCTTTAATCAGTGCATTAGCATTTAGCGACCGCT
CCCTGCTTGCTAAAGAGGATTGGCAGTCTCTGCGAGATAGCGGGCTGCTGCATTTGGTCTCGATCTCTGGTTTGCATATT
GGAATGGCGTTTGCTTTTGGCATGAGTTTGGGCTTTGTCATACGGCTTATAATCCCAAAATTCGTTCACTTTCCTTCCGT
TGTCGGTTTATTGGCAGCGCTTGTTTATGCGTGGTTGGCCGATTTTTCTTTACCTACAACCCGTGCTTTTTCGGTTTGTG
TCATTTATCTCGTACTTAAAGCGGCTTTGGTTCATTGGAGCCCTTGGCGAGTGTTACTGCTCGCAGTCTCGATACAGCTT
TTCATCGAACCTTTTGCTTCATTCACGATGAGCTTCTGGTTGTCTTATCTGTCCGTGGTTGCCGTGCTTTTAGCCGTGAA
TGTGGTTCAACAGCGACGCGGCAATTGGCAAACGAAGCTGAGTTCACTACTAAAAATACAGTTAGTGCTTACTTTGCTTA
TCGTGCCAATCAGCGGTGCGTTTTTCTCTGGAACAAGTTTGGTATCCATCGCTTATAACCTAGTTTTCATTCCTTGGTTT
GGTTTTTTGGTCGTCCCTTTGATGTTCCTAGCGCTGATTGTAACCCCAATTTCTTTTAAGTTGGCTGGTATGCTTTGGCA
ACTGGTGGATTGGGTGTTGTTGCCACTGACATGGTCATTACAGTTTGCGGTCGGGAGTTGGCATTTTGTAAGTTTGCCTT
TGACCTTAACGATACTCGCAGTTGCCATCTGTGAATTATTGAGACGTTTTTTGAATCGGGGCTCGTTCGTTACGTTAGTC
ATTCTAGTAACGAGTGTCGCCCTATTTTATGAGCGTACAACGAATTCTTGGCGAGTGGACGTGTTAGATGTAGGGCACGG
CCTTGCGGTATTAATTGAGAAGCGTGGAAAGGTGGCGCTTTACGACACAGGCAAAGCTTGGAACTCAGGGAGCATCGCTC
AGCAAGTTATCTCTCCTATATTACATCGCAGAGGTTTTGGCACCATTGATATGTTCATTATCAGTCATGCTGATTCGGAT
CATGCAGGAGGTAGGCAGTATATGGAGCAGCACTTTTCGCCAGCGCAGAAATTCAGCAGTCAAAACTACGCTAACTACCA
ATCTTGTATTGCGGGTGAACGCTGGTATTGGCAGGCGCTTTATTTTGAAGTCTTATGGCCACCTAAGCAGGTAAACCGTG
CTTATAATCCTCATTCGTGTGTTGTTCGAGTTGTTGATAAGGAATCGGGTTTTAAATTGCTTTTGACTGGCGATATTGAA
GCCGTCAGTGAGTGGATACTTATGCGTGAACCCAACAAGCTAGAGAGTGATGTTATGCTTGTTCCTCATCATGGTAGCAA
GAGCTCTTCGAATCCAAAATTTGTTCAAACTGTCTCTCCAACCTTGGCGATAGCCTCGTTAGCAAAAAGTAATCAATGGG
GCATGCCTGCTGAAAATGTTTTATCGGCTTATCAGGCAGCAAGTGCCCACTGGCTGGATACGGGAAATCATGGGCAGGTA
TCGGTGTTTATTGAGCGAGACAATTGGTACTTTGAAGCTAAACGTAGTGAGACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCGAGCGTTATATCGTCTGCGTGGTGGCCGACGATGCC
TGATTGGCGATGGTTGCTGCTGGGAATAATTGCCACTGGCTCGATTATCAAATTACGTCGTGGCTTATTGAGCATAGGCG
TAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCGAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATCAATCA
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGATTGATAACCGCTTTCCCACTGCCCGTTAACAGTG
AGTTCACTACTCAGGTGACGATCAAACCGATTCTGGGTTTGAAGAATGAGGCGGGGGTTGATGCGGAAAAGCAAGCGGTA
GGTAAGGGTATTGTCGCTAGAGCTGTCACACCTGATGACGCGAAATGGTTGATTCGTACACACTCTTCATTTCGACAGCA
AATCATTGCGGCCGTTGATACTCATATTGCTGAACTTGACCATTTCCCTTTAATCAGTGCATTAGCATTTAGCGACCGCT
CCCTGCTTGCTAAAGAGGATTGGCAGTCTCTGCGAGATAGCGGGCTGCTGCATTTGGTCTCGATCTCTGGTTTGCATATT
GGAATGGCGTTTGCTTTTGGCATGAGTTTGGGCTTTGTCATACGGCTTATAATCCCAAAATTCGTTCACTTTCCTTCCGT
TGTCGGTTTATTGGCAGCGCTTGTTTATGCGTGGTTGGCCGATTTTTCTTTACCTACAACCCGTGCTTTTTCGGTTTGTG
TCATTTATCTCGTACTTAAAGCGGCTTTGGTTCATTGGAGCCCTTGGCGAGTGTTACTGCTCGCAGTCTCGATACAGCTT
TTCATCGAACCTTTTGCTTCATTCACGATGAGCTTCTGGTTGTCTTATCTGTCCGTGGTTGCCGTGCTTTTAGCCGTGAA
TGTGGTTCAACAGCGACGCGGCAATTGGCAAACGAAGCTGAGTTCACTACTAAAAATACAGTTAGTGCTTACTTTGCTTA
TCGTGCCAATCAGCGGTGCGTTTTTCTCTGGAACAAGTTTGGTATCCATCGCTTATAACCTAGTTTTCATTCCTTGGTTT
GGTTTTTTGGTCGTCCCTTTGATGTTCCTAGCGCTGATTGTAACCCCAATTTCTTTTAAGTTGGCTGGTATGCTTTGGCA
ACTGGTGGATTGGGTGTTGTTGCCACTGACATGGTCATTACAGTTTGCGGTCGGGAGTTGGCATTTTGTAAGTTTGCCTT
TGACCTTAACGATACTCGCAGTTGCCATCTGTGAATTATTGAGACGTTTTTTGAATCGGGGCTCGTTCGTTACGTTAGTC
ATTCTAGTAACGAGTGTCGCCCTATTTTATGAGCGTACAACGAATTCTTGGCGAGTGGACGTGTTAGATGTAGGGCACGG
CCTTGCGGTATTAATTGAGAAGCGTGGAAAGGTGGCGCTTTACGACACAGGCAAAGCTTGGAACTCAGGGAGCATCGCTC
AGCAAGTTATCTCTCCTATATTACATCGCAGAGGTTTTGGCACCATTGATATGTTCATTATCAGTCATGCTGATTCGGAT
CATGCAGGAGGTAGGCAGTATATGGAGCAGCACTTTTCGCCAGCGCAGAAATTCAGCAGTCAAAACTACGCTAACTACCA
ATCTTGTATTGCGGGTGAACGCTGGTATTGGCAGGCGCTTTATTTTGAAGTCTTATGGCCACCTAAGCAGGTAAACCGTG
CTTATAATCCTCATTCGTGTGTTGTTCGAGTTGTTGATAAGGAATCGGGTTTTAAATTGCTTTTGACTGGCGATATTGAA
GCCGTCAGTGAGTGGATACTTATGCGTGAACCCAACAAGCTAGAGAGTGATGTTATGCTTGTTCCTCATCATGGTAGCAA
GAGCTCTTCGAATCCAAAATTTGTTCAAACTGTCTCTCCAACCTTGGCGATAGCCTCGTTAGCAAAAAGTAATCAATGGG
GCATGCCTGCTGAAAATGTTTTATCGGCTTATCAGGCAGCAAGTGCCCACTGGCTGGATACGGGAAATCATGGGCAGGTA
TCGGTGTTTATTGAGCGAGACAATTGGTACTTTGAAGCTAAACGTAGTGAGACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEC | Vibrio campbellii strain DS40M4 |
96.543 |
100 |
0.965 |
| comEC | Vibrio parahaemolyticus RIMD 2210633 |
66.223 |
100 |
0.662 |
| comEC | Vibrio cholerae strain A1552 |
40.957 |
100 |
0.41 |