Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BVELS4_RS12140 Genome accession   NZ_CP050424
Coordinates   2528088..2528423 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain S4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2523088..2533423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVELS4_RS12120 (BVELS4_02432) gcvT 2523694..2524794 (-) 1101 WP_025284994.1 glycine cleavage system aminomethyltransferase GcvT -
  BVELS4_RS12125 (BVELS4_02433) - 2525218..2526888 (+) 1671 WP_108655005.1 SNF2-related protein -
  BVELS4_RS12130 (BVELS4_02434) - 2526910..2527704 (+) 795 WP_015240204.1 YqhG family protein -
  BVELS4_RS12135 (BVELS4_02435) sinI 2527881..2528054 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  BVELS4_RS12140 (BVELS4_02436) sinR 2528088..2528423 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BVELS4_RS12145 (BVELS4_02437) - 2528471..2529256 (-) 786 WP_007408329.1 TasA family protein -
  BVELS4_RS12150 (BVELS4_02438) - 2529321..2529905 (-) 585 WP_025284996.1 signal peptidase I -
  BVELS4_RS12155 (BVELS4_02439) tapA 2529877..2530548 (-) 672 WP_015240206.1 amyloid fiber anchoring/assembly protein TapA -
  BVELS4_RS12160 (BVELS4_02440) - 2530807..2531136 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  BVELS4_RS12165 (BVELS4_02441) - 2531176..2531355 (-) 180 WP_003153093.1 YqzE family protein -
  BVELS4_RS12170 (BVELS4_02442) comGG 2531412..2531789 (-) 378 WP_167340753.1 competence type IV pilus minor pilin ComGG Machinery gene
  BVELS4_RS12175 (BVELS4_02443) comGF 2531790..2532290 (-) 501 WP_257720329.1 competence type IV pilus minor pilin ComGF -
  BVELS4_RS12180 (BVELS4_02444) comGE 2532199..2532513 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  BVELS4_RS12185 (BVELS4_02445) comGD 2532497..2532934 (-) 438 WP_043020787.1 competence type IV pilus minor pilin ComGD Machinery gene
  BVELS4_RS12190 (BVELS4_02446) comGC 2532924..2533190 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=432565 BVELS4_RS12140 WP_003153104.1 2528088..2528423(+) (sinR) [Bacillus velezensis strain S4]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=432565 BVELS4_RS12140 WP_003153104.1 2528088..2528423(+) (sinR) [Bacillus velezensis strain S4]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991