Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   HB367_RS15135 Genome accession   NZ_CP050415
Coordinates   3095972..3096445 (+) Length   157 a.a.
NCBI ID   WP_001214068.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PM193665     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3090972..3101445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB367_RS15110 (HB367_15110) - 3091435..3093540 (-) 2106 WP_001117591.1 RelA/SpoT family protein -
  HB367_RS15115 (HB367_15115) - 3093580..3093710 (-) 131 Protein_2958 hypothetical protein -
  HB367_RS15120 (HB367_15120) rpoZ 3093749..3094027 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HB367_RS15125 (HB367_15125) gmk 3094100..3094729 (-) 630 WP_000015936.1 guanylate kinase -
  HB367_RS15130 (HB367_15130) ispH 3094852..3095802 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HB367_RS15135 (HB367_15135) fimU 3095972..3096445 (+) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HB367_RS15140 (HB367_15140) pilV 3096439..3096999 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HB367_RS15145 (HB367_15145) pilW 3097000..3098001 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  HB367_RS15150 (HB367_15150) pilX 3097998..3098816 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=432463 HB367_RS15135 WP_001214068.1 3095972..3096445(+) (fimU) [Acinetobacter baumannii strain PM193665]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=432463 HB367_RS15135 WP_001214068.1 3095972..3096445(+) (fimU) [Acinetobacter baumannii strain PM193665]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994