Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   HB367_RS15145 Genome accession   NZ_CP050415
Coordinates   3097000..3098001 (+) Length   333 a.a.
NCBI ID   WP_000079199.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PM193665     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3092000..3103001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB367_RS15115 (HB367_15115) - 3093580..3093710 (-) 131 Protein_2958 hypothetical protein -
  HB367_RS15120 (HB367_15120) rpoZ 3093749..3094027 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HB367_RS15125 (HB367_15125) gmk 3094100..3094729 (-) 630 WP_000015936.1 guanylate kinase -
  HB367_RS15130 (HB367_15130) ispH 3094852..3095802 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HB367_RS15135 (HB367_15135) fimU 3095972..3096445 (+) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HB367_RS15140 (HB367_15140) pilV 3096439..3096999 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HB367_RS15145 (HB367_15145) pilW 3097000..3098001 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  HB367_RS15150 (HB367_15150) pilX 3097998..3098816 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HB367_RS15155 (HB367_15155) pilY1 3098828..3102682 (+) 3855 WP_000768944.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35899.59 Da        Isoelectric Point: 6.3350

>NTDB_id=432465 HB367_RS15145 WP_000079199.1 3097000..3098001(+) (pilW) [Acinetobacter baumannii strain PM193665]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGTKN
AAGNFAYYTIPQYRVAAQAARDASPTVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQHVHAADNRNRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=432465 HB367_RS15145 WP_000079199.1 3097000..3098001(+) (pilW) [Acinetobacter baumannii strain PM193665]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCTAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTACGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAACTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGCATGTGCATGCTGCTGATAACAGAAATCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

98.799

100

0.988