Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HB367_RS15140 Genome accession   NZ_CP050415
Coordinates   3096439..3096999 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PM193665     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3091439..3101999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB367_RS15115 (HB367_15115) - 3093580..3093710 (-) 131 Protein_2958 hypothetical protein -
  HB367_RS15120 (HB367_15120) rpoZ 3093749..3094027 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HB367_RS15125 (HB367_15125) gmk 3094100..3094729 (-) 630 WP_000015936.1 guanylate kinase -
  HB367_RS15130 (HB367_15130) ispH 3094852..3095802 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HB367_RS15135 (HB367_15135) fimU 3095972..3096445 (+) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HB367_RS15140 (HB367_15140) pilV 3096439..3096999 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HB367_RS15145 (HB367_15145) pilW 3097000..3098001 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  HB367_RS15150 (HB367_15150) pilX 3097998..3098816 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=432464 HB367_RS15140 WP_002194578.1 3096439..3096999(+) (pilV) [Acinetobacter baumannii strain PM193665]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=432464 HB367_RS15140 WP_002194578.1 3096439..3096999(+) (pilV) [Acinetobacter baumannii strain PM193665]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414