Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   HB367_RS15020 Genome accession   NZ_CP050415
Coordinates   3069916..3070656 (+) Length   246 a.a.
NCBI ID   WP_000076097.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PM193665     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3064916..3075656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB367_RS15005 (HB367_15005) ponA 3065504..3068059 (-) 2556 WP_000736686.1 penicillin-binding protein PBP1a -
  HB367_RS15010 (HB367_15010) pilM 3068220..3069278 (+) 1059 WP_005119265.1 pilus assembly protein PilM Machinery gene
  HB367_RS15015 (HB367_15015) pilN 3069278..3069919 (+) 642 WP_163050480.1 PilN domain-containing protein Machinery gene
  HB367_RS15020 (HB367_15020) pilO 3069916..3070656 (+) 741 WP_000076097.1 type 4a pilus biogenesis protein PilO Machinery gene
  HB367_RS15025 (HB367_15025) pilP 3070667..3071194 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  HB367_RS15030 (HB367_15030) pilQ 3071257..3073422 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  HB367_RS15035 (HB367_15035) aroK 3073434..3074003 (+) 570 WP_000643712.1 shikimate kinase AroK -
  HB367_RS15040 (HB367_15040) aroB 3074032..3075114 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27785.55 Da        Isoelectric Point: 4.8357

>NTDB_id=432459 HB367_RS15020 WP_000076097.1 3069916..3070656(+) (pilO) [Acinetobacter baumannii strain PM193665]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGFFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=432459 HB367_RS15020 WP_000076097.1 3069916..3070656(+) (pilO) [Acinetobacter baumannii strain PM193665]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTTTTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.187

100

0.992
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679