Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HB367_RS15015 Genome accession   NZ_CP050415
Coordinates   3069278..3069919 (+) Length   213 a.a.
NCBI ID   WP_163050480.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PM193665     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3064278..3074919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB367_RS14995 (HB367_14995) - 3064327..3064659 (+) 333 WP_000169603.1 hypothetical protein -
  HB367_RS15000 (HB367_15000) - 3064662..3065486 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  HB367_RS15005 (HB367_15005) ponA 3065504..3068059 (-) 2556 WP_000736686.1 penicillin-binding protein PBP1a -
  HB367_RS15010 (HB367_15010) pilM 3068220..3069278 (+) 1059 WP_005119265.1 pilus assembly protein PilM Machinery gene
  HB367_RS15015 (HB367_15015) pilN 3069278..3069919 (+) 642 WP_163050480.1 PilN domain-containing protein Machinery gene
  HB367_RS15020 (HB367_15020) pilO 3069916..3070656 (+) 741 WP_000076097.1 type 4a pilus biogenesis protein PilO Machinery gene
  HB367_RS15025 (HB367_15025) pilP 3070667..3071194 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  HB367_RS15030 (HB367_15030) pilQ 3071257..3073422 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  HB367_RS15035 (HB367_15035) aroK 3073434..3074003 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24091.42 Da        Isoelectric Point: 5.1428

>NTDB_id=432458 HB367_RS15015 WP_163050480.1 3069278..3069919(+) (pilN) [Acinetobacter baumannii strain PM193665]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQREA
IIERMKLIQDLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=432458 HB367_RS15015 WP_163050480.1 3069278..3069919(+) (pilN) [Acinetobacter baumannii strain PM193665]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGTACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGAAGCC
ATTATTGAACGCATGAAGTTGATTCAAGATTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704