Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   HBK86_RS16370 Genome accession   NZ_CP050385
Coordinates   3355211..3356029 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain VB82     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3350211..3361029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBK86_RS16355 (HBK86_16355) pilE 3350428..3350853 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  HBK86_RS16360 (HBK86_16360) pilY2 3350850..3351332 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  HBK86_RS16365 (HBK86_16365) pilY1 3351345..3355199 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  HBK86_RS16370 (HBK86_16370) pilX 3355211..3356029 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HBK86_RS16375 (HBK86_16375) pilW 3356026..3357027 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  HBK86_RS16380 (HBK86_16380) pilV 3357028..3357588 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HBK86_RS16385 (HBK86_16385) fimU 3357582..3358055 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HBK86_RS16390 (HBK86_16390) ispH 3358225..3359175 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HBK86_RS16395 (HBK86_16395) gmk 3359298..3359927 (+) 630 WP_000015937.1 guanylate kinase -
  HBK86_RS16400 (HBK86_16400) rpoZ 3360000..3360278 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HBK86_RS16405 (HBK86_16405) - 3360317..3360447 (+) 131 Protein_3224 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=432080 HBK86_RS16370 WP_000149374.1 3355211..3356029(-) (pilX) [Acinetobacter baumannii strain VB82]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=432080 HBK86_RS16370 WP_000149374.1 3355211..3356029(-) (pilX) [Acinetobacter baumannii strain VB82]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993