Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   HBK86_RS16385 Genome accession   NZ_CP050385
Coordinates   3357582..3358055 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain VB82     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3352582..3363055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBK86_RS16370 (HBK86_16370) pilX 3355211..3356029 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HBK86_RS16375 (HBK86_16375) pilW 3356026..3357027 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  HBK86_RS16380 (HBK86_16380) pilV 3357028..3357588 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HBK86_RS16385 (HBK86_16385) fimU 3357582..3358055 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HBK86_RS16390 (HBK86_16390) ispH 3358225..3359175 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HBK86_RS16395 (HBK86_16395) gmk 3359298..3359927 (+) 630 WP_000015937.1 guanylate kinase -
  HBK86_RS16400 (HBK86_16400) rpoZ 3360000..3360278 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HBK86_RS16405 (HBK86_16405) - 3360317..3360447 (+) 131 Protein_3224 hypothetical protein -
  HBK86_RS16410 (HBK86_16410) - 3360487..3362592 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=432083 HBK86_RS16385 WP_001214065.1 3357582..3358055(-) (fimU) [Acinetobacter baumannii strain VB82]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=432083 HBK86_RS16385 WP_001214065.1 3357582..3358055(-) (fimU) [Acinetobacter baumannii strain VB82]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1