Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   HBK86_RS16360 Genome accession   NZ_CP050385
Coordinates   3350850..3351332 (-) Length   160 a.a.
NCBI ID   WP_001046423.1    Uniprot ID   A0A9E9MD39
Organism   Acinetobacter baumannii strain VB82     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3345850..3356332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBK86_RS16325 (HBK86_16325) - 3345960..3346991 (+) 1032 Protein_3208 lipase secretion chaperone -
  HBK86_RS16330 (HBK86_16330) - 3347106..3348047 (+) 942 WP_085943974.1 lipase family alpha/beta hydrolase -
  HBK86_RS16335 (HBK86_16335) rplS 3348100..3348468 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  HBK86_RS16340 (HBK86_16340) trmD 3348676..3349416 (-) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HBK86_RS16345 (HBK86_16345) rimM 3349462..3350010 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  HBK86_RS16350 (HBK86_16350) rpsP 3350030..3350281 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  HBK86_RS16355 (HBK86_16355) pilE 3350428..3350853 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  HBK86_RS16360 (HBK86_16360) pilY2 3350850..3351332 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  HBK86_RS16365 (HBK86_16365) pilY1 3351345..3355199 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  HBK86_RS16370 (HBK86_16370) pilX 3355211..3356029 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17575.84 Da        Isoelectric Point: 8.4834

>NTDB_id=432078 HBK86_RS16360 WP_001046423.1 3350850..3351332(-) (pilY2) [Acinetobacter baumannii strain VB82]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAVKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=432078 HBK86_RS16360 WP_001046423.1 3350850..3351332(-) (pilY2) [Acinetobacter baumannii strain VB82]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGTTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGAACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

38.953

100

0.419