Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HB736_RS04150 Genome accession   NZ_CP050328
Coordinates   877934..879109 (-) Length   391 a.a.
NCBI ID   WP_174706268.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DVT419     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 872934..884109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB736_RS04120 (HB736_04125) pilX 873585..874172 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  HB736_RS04125 (HB736_04130) pilW 874169..874993 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  HB736_RS04130 (HB736_04135) pilV 874990..875547 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  HB736_RS04135 (HB736_04140) - 875538..876044 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  HB736_RS04140 (HB736_04145) - 876150..876659 (-) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  HB736_RS04145 (HB736_04150) thiO 876794..877888 (+) 1095 WP_023084775.1 glycine oxidase ThiO -
  HB736_RS04150 (HB736_04155) pilR 877934..879109 (-) 1176 WP_174706268.1 sigma-54 dependent transcriptional regulator Regulator
  HB736_RS04155 (HB736_04160) pilS 879124..880716 (-) 1593 WP_003110428.1 two-component system sensor histidine kinase PilS Regulator
  HB736_RS04160 (HB736_04165) - 880706..880951 (-) 246 WP_003102591.1 PP0621 family protein -
  HB736_RS04165 (HB736_04170) - 881108..882133 (-) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  HB736_RS04170 (HB736_04175) rluD 882279..883241 (+) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HB736_RS04175 (HB736_04180) pgeF 883238..883966 (+) 729 WP_003161770.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43611.22 Da        Isoelectric Point: 6.5241

>NTDB_id=431603 HB736_RS04150 WP_174706268.1 877934..879109(-) (pilR) [Pseudomonas aeruginosa strain DVT419]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLADAPGASQEGAASLSEIDNLEDYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=431603 HB736_RS04150 WP_174706268.1 877934..879109(-) (pilR) [Pseudomonas aeruginosa strain DVT419]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGTGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGACTA
CCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCGCC
TGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(348-388)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

87.191

100

0.992
  pilR Acinetobacter baumannii strain A118

54.489

82.609

0.45