Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HB736_RS04130 Genome accession   NZ_CP050328
Coordinates   874990..875547 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DVT419     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 869990..880547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB736_RS04115 (HB736_04120) pilY1 870082..873573 (-) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  HB736_RS04120 (HB736_04125) pilX 873585..874172 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  HB736_RS04125 (HB736_04130) pilW 874169..874993 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  HB736_RS04130 (HB736_04135) pilV 874990..875547 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  HB736_RS04135 (HB736_04140) - 875538..876044 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  HB736_RS04140 (HB736_04145) - 876150..876659 (-) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  HB736_RS04145 (HB736_04150) thiO 876794..877888 (+) 1095 WP_023084775.1 glycine oxidase ThiO -
  HB736_RS04150 (HB736_04155) pilR 877934..879109 (-) 1176 WP_174706268.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=431602 HB736_RS04130 WP_003119423.1 874990..875547(-) (pilV) [Pseudomonas aeruginosa strain DVT419]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=431602 HB736_RS04130 WP_003119423.1 874990..875547(-) (pilV) [Pseudomonas aeruginosa strain DVT419]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995