Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HAV28_RS18320 Genome accession   NZ_CP050291
Coordinates   4041425..4043662 (-) Length   745 a.a.
NCBI ID   WP_016391245.1    Uniprot ID   A0AAD0QWV1
Organism   Pseudomonas plecoglossicida strain PQLYC4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4036425..4048662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV28_RS18285 (HAV28_18300) murB 4036826..4037845 (-) 1020 WP_016391239.1 UDP-N-acetylmuramate dehydrogenase -
  HAV28_RS18290 (HAV28_18305) - 4037842..4038306 (-) 465 WP_016391240.1 low molecular weight protein-tyrosine-phosphatase -
  HAV28_RS18295 (HAV28_18310) kdsB 4038306..4039070 (-) 765 WP_016391241.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HAV28_RS18300 (HAV28_18315) - 4039067..4039252 (-) 186 WP_003247142.1 Trm112 family protein -
  HAV28_RS18305 (HAV28_18320) lpxK 4039297..4040304 (-) 1008 WP_016391242.1 tetraacyldisaccharide 4'-kinase -
  HAV28_RS18310 (HAV28_18325) - 4040304..4040738 (-) 435 WP_016391243.1 biopolymer transporter ExbD -
  HAV28_RS18315 (HAV28_18330) exbB 4040735..4041370 (-) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HAV28_RS18320 (HAV28_18335) comA 4041425..4043662 (-) 2238 WP_016391245.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HAV28_RS18325 (HAV28_18340) - 4043805..4044431 (+) 627 WP_116131208.1 DUF2062 domain-containing protein -
  HAV28_RS18330 (HAV28_18345) - 4044315..4045094 (-) 780 WP_008096461.1 ABC transporter permease -
  HAV28_RS18335 (HAV28_18350) - 4045091..4046023 (-) 933 WP_016391248.1 ABC transporter ATP-binding protein -
  HAV28_RS18340 (HAV28_18355) - 4046159..4046782 (-) 624 WP_016391249.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 80192.22 Da        Isoelectric Point: 9.2260

>NTDB_id=431315 HAV28_RS18320 WP_016391245.1 4041425..4043662(-) (comA) [Pseudomonas plecoglossicida strain PQLYC4]
MRTGMLALALGLLCPGLLPVLPSVGWLWLLLCSGLLCLRTRGWPVGCFLLGLCWAGWSAQQALDDRLAPLLDGRTLWVEG
TVVGLPTATGQGTRFVLEHPVSRRAELPARLQLSWFDGPPVRAGERWRLAVSLQRPAGLLNPHGPDREAQLLARRIGASA
TVKAGQVLDAQAPSWRDTLRQRLLAIDANGREAALVALVLGDGGGLARSDWQVLQATGTVHLLVISGQHIGLVAGLLYAL
VAGLARWGLWPRRLPWLPWACALALSAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGAFFPLLVALNLVLIVEPL
AALLPGFWLSFAAVATLVYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPISLSAPLANLVAVPWISLAVLPLAL
LGTLLLPLAGVGEALLWLAGAMLDGLFGLLGVIAQWRPAWVPPALPLWAWMLVCLGALLVLLPTGVPLRGLGGVMLLALW
VPREPVPHGLVEVWQLDVGQGLAVLLRTREHTLLYDAGPARGDLDLGERVVLPTLYKLGVRQLDLMVISHAHADHAGGAL
AVARGLPVAQVLGGEPRALASSLSAQPCLGHEGWEWDGVRFSLWQWADGQGSNDRSCVLLVEARGERLLLAGDMEAGAEQ
AWLAAIEAPAIDWLQAPHHGSRSSSTEAFIRATAPRGVMISRGRNNGFGHPHEQVMERYRRHGLAIHDTAVEGALRLLLG
SQGEVEGVRGQRRFWREGNSLTFGR

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=431315 HAV28_RS18320 WP_016391245.1 4041425..4043662(-) (comA) [Pseudomonas plecoglossicida strain PQLYC4]
ATGCGCACAGGGATGCTTGCGCTGGCACTCGGGCTGCTGTGCCCGGGTCTGTTACCCGTATTGCCGTCGGTCGGATGGCT
GTGGCTGTTGCTGTGCAGCGGCCTGCTGTGCCTGCGCACGCGTGGCTGGCCGGTGGGTTGTTTCCTGCTCGGTTTGTGCT
GGGCCGGTTGGTCGGCGCAGCAGGCGTTGGATGATCGCCTGGCGCCGCTGCTGGATGGCCGCACCCTGTGGGTGGAAGGG
ACGGTGGTCGGGCTGCCGACCGCGACAGGGCAGGGCACGCGCTTCGTCCTCGAACACCCCGTTTCGCGCCGTGCCGAGTT
GCCCGCCCGGCTGCAGCTGAGCTGGTTCGATGGCCCGCCGGTGCGGGCGGGCGAGCGCTGGCGCCTGGCGGTAAGCTTGC
AGCGCCCAGCGGGGCTGCTGAACCCCCATGGGCCTGATCGCGAGGCGCAATTGCTGGCGCGGCGAATTGGCGCCAGCGCA
ACGGTCAAGGCAGGGCAGGTGCTCGATGCGCAAGCGCCAAGCTGGCGCGATACCCTGCGCCAGCGTTTGCTGGCCATCGA
TGCCAACGGCCGGGAAGCGGCATTGGTGGCGCTGGTGCTCGGCGACGGTGGCGGGCTGGCCCGCAGCGATTGGCAAGTGC
TGCAGGCCACGGGCACGGTGCACCTGCTGGTGATTTCGGGGCAGCACATCGGCCTGGTGGCCGGACTGCTCTATGCGCTG
GTGGCCGGCTTGGCGCGTTGGGGGCTGTGGCCTCGGCGACTGCCGTGGCTGCCTTGGGCATGCGCCCTGGCATTGTCGGC
GGCCCTGGCCTACGGCTGGTTGGCCGGTGGCGGGGTGCCGGTGCAGCGTGCCTGCCTGATGTTGGCGGTGGTGCTGTTGT
GGCGCTTGCGCTTTCGTCACCTGGGGGCGTTCTTTCCCTTGCTGGTTGCACTGAACCTGGTGCTGATCGTCGAGCCCCTG
GCCGCCCTGCTGCCGGGTTTCTGGCTGTCCTTCGCGGCGGTGGCAACCCTCGTCTACTGCTTCAGTGCCCGCCTCGGCGG
CTGGCGCCCCTGGCAGGCGTGGACCCGCGCCCAGTGGGTGATCGCTATCGGTTTGCTGCCGGTGCTGCTGGCTACCGGGC
TGCCGATCAGCCTGAGCGCGCCATTGGCCAACCTGGTGGCTGTGCCCTGGATCAGCCTGGCGGTATTGCCGTTGGCCTTG
CTCGGTACCCTGCTGTTGCCGCTGGCTGGTGTGGGCGAGGCGCTGTTGTGGCTGGCGGGCGCCATGCTCGATGGCTTGTT
CGGGTTGCTGGGGGTTATTGCGCAGTGGCGGCCTGCCTGGGTTCCGCCAGCATTGCCGCTGTGGGCCTGGATGCTGGTGT
GCCTGGGCGCGCTGCTGGTCCTGCTGCCCACCGGTGTGCCCTTGCGCGGACTGGGCGGTGTCATGCTGCTTGCTTTGTGG
GTGCCCAGGGAGCCCGTGCCGCATGGATTGGTCGAGGTCTGGCAGTTGGACGTCGGCCAGGGCCTGGCGGTGCTGCTGCG
CACGCGAGAGCACACGTTGCTGTACGACGCGGGCCCGGCGCGGGGCGACCTTGACCTTGGCGAGCGGGTGGTGCTGCCGA
CCCTCTACAAGTTGGGTGTGCGGCAGTTGGACCTGATGGTGATCAGCCATGCCCACGCCGATCATGCGGGTGGAGCGTTG
GCGGTCGCTCGCGGATTGCCGGTAGCGCAGGTACTGGGTGGCGAGCCGCGGGCCCTCGCCAGTTCGTTGTCGGCGCAGCC
GTGCCTCGGTCACGAGGGCTGGGAATGGGATGGCGTGCGCTTTTCGCTCTGGCAGTGGGCCGACGGGCAGGGCAGTAACG
ATCGTTCCTGCGTGCTGTTGGTCGAGGCGCGTGGCGAACGCCTGCTGCTGGCGGGTGACATGGAGGCCGGTGCCGAGCAG
GCCTGGCTGGCAGCCATCGAAGCGCCGGCGATCGATTGGCTGCAGGCGCCGCACCATGGCAGCCGCAGTTCATCCACAGA
AGCGTTCATCCGTGCCACGGCGCCGCGCGGGGTGATGATTTCCAGGGGGCGCAACAATGGCTTCGGGCACCCCCATGAAC
AGGTGATGGAGCGCTATCGGCGCCATGGCCTGGCGATTCACGATACGGCGGTGGAGGGCGCGTTGCGCCTGCTGCTGGGC
AGCCAGGGCGAGGTCGAGGGCGTGCGCGGGCAGCGGCGCTTCTGGCGCGAGGGCAATTCCCTGACCTTCGGCAGATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.275

96.51

0.562
  comA Ralstonia pseudosolanacearum GMI1000

34.395

100

0.362