Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HAV28_RS18315 Genome accession   NZ_CP050291
Coordinates   4040735..4041370 (-) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas plecoglossicida strain PQLYC4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4035735..4046370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV28_RS18285 (HAV28_18300) murB 4036826..4037845 (-) 1020 WP_016391239.1 UDP-N-acetylmuramate dehydrogenase -
  HAV28_RS18290 (HAV28_18305) - 4037842..4038306 (-) 465 WP_016391240.1 low molecular weight protein-tyrosine-phosphatase -
  HAV28_RS18295 (HAV28_18310) kdsB 4038306..4039070 (-) 765 WP_016391241.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HAV28_RS18300 (HAV28_18315) - 4039067..4039252 (-) 186 WP_003247142.1 Trm112 family protein -
  HAV28_RS18305 (HAV28_18320) lpxK 4039297..4040304 (-) 1008 WP_016391242.1 tetraacyldisaccharide 4'-kinase -
  HAV28_RS18310 (HAV28_18325) - 4040304..4040738 (-) 435 WP_016391243.1 biopolymer transporter ExbD -
  HAV28_RS18315 (HAV28_18330) exbB 4040735..4041370 (-) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HAV28_RS18320 (HAV28_18335) comA 4041425..4043662 (-) 2238 WP_016391245.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HAV28_RS18325 (HAV28_18340) - 4043805..4044431 (+) 627 WP_116131208.1 DUF2062 domain-containing protein -
  HAV28_RS18330 (HAV28_18345) - 4044315..4045094 (-) 780 WP_008096461.1 ABC transporter permease -
  HAV28_RS18335 (HAV28_18350) - 4045091..4046023 (-) 933 WP_016391248.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=431314 HAV28_RS18315 WP_016391244.1 4040735..4041370(-) (exbB) [Pseudomonas plecoglossicida strain PQLYC4]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=431314 HAV28_RS18315 WP_016391244.1 4040735..4041370(-) (exbB) [Pseudomonas plecoglossicida strain PQLYC4]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACGCCACCGCACCTGCTCGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCGTTGGGCGAGATCCTCGCGGCAGGCCTGGCCAAC
TCGCGCCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCCGCCTCGCGGGTCATCCACGAACTCGAGCGCTACAT
CAGCACCCTCGGCACCATTGCCGCAATGGCCCCGCTGCTAGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCTAACGCCGCCGTGCTGGCAGGGGGTATCTCCAAGGCCCTGGTCACCACCGCC
GCCGGCTTGATGGTGGGTATCCCCGCCGTGTTCTTCCATCGCTTCCTGCTGCGTCGCATCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTCATCCAGGGCGACCGTGAAGTCGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829