Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   HB750_RS04030 Genome accession   NZ_CP050273
Coordinates   795329..796018 (+) Length   229 a.a.
NCBI ID   WP_002288095.1    Uniprot ID   -
Organism   Streptococcus mutans strain P1     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 790329..801018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB750_RS04005 (HB750_04005) - 791026..791259 (+) 234 WP_002262193.1 DUF1858 domain-containing protein -
  HB750_RS04010 (HB750_04010) - 791259..792623 (+) 1365 WP_032526261.1 DUF438 domain-containing protein -
  HB750_RS04015 (HB750_04015) - 792750..793477 (-) 728 Protein_778 ABC transporter permease -
  HB750_RS04020 (HB750_04020) - 793474..794214 (-) 741 WP_002265501.1 ABC transporter permease -
  HB750_RS04025 (HB750_04025) - 794214..795122 (-) 909 WP_002283587.1 ABC transporter ATP-binding protein -
  HB750_RS04030 (HB750_04030) scnR 795329..796018 (+) 690 WP_002288095.1 response regulator transcription factor Regulator
  HB750_RS04035 (HB750_04035) scnK 796019..797326 (+) 1308 WP_002270206.1 sensor histidine kinase Regulator
  HB750_RS04040 (HB750_04040) truB 797419..798300 (+) 882 WP_019804787.1 tRNA pseudouridine(55) synthase TruB -
  HB750_RS04045 (HB750_04045) - 798331..799251 (+) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  HB750_RS04050 (HB750_04050) spx 799312..799725 (+) 414 WP_002263835.1 transcriptional regulator Spx -
  HB750_RS04055 (HB750_04055) - 799718..799996 (+) 279 WP_002266791.1 UPF0223 family protein -
  HB750_RS04060 (HB750_04060) - 799986..800744 (+) 759 WP_019318294.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26218.59 Da        Isoelectric Point: 6.0486

>NTDB_id=431261 HB750_RS04030 WP_002288095.1 795329..796018(+) (scnR) [Streptococcus mutans strain P1]
MNYKEKKILILDDNPEILEMVQESLNIAGFNNLTGVQSKKEALEQLGKISFDLAILDIMLPDGSGFEVLREIRKTSTMPV
LFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAYPEKDDTLILPTCQVNFSQALITKGELEIQLTAKEY
SILKVLYNNQNRIVTFDQLLEKVWGLQYQGYENTMMAHIRKIRQKIEANPSKPECLLTVKGLGYKLKVS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=431261 HB750_RS04030 WP_002288095.1 795329..796018(+) (scnR) [Streptococcus mutans strain P1]
ATGAATTATAAAGAGAAAAAAATCTTAATTTTAGATGACAATCCAGAAATTTTAGAAATGGTGCAAGAGTCTTTAAACAT
TGCTGGTTTTAACAACCTAACAGGCGTGCAATCAAAAAAAGAGGCCTTGGAGCAACTTGGCAAAATATCCTTTGATTTGG
CCATTTTAGACATTATGCTGCCTGATGGTTCGGGTTTTGAGGTACTAAGAGAAATTCGGAAAACTTCTACTATGCCAGTA
CTCTTTTTGTCTGCGGTATCCGACATTGAAAAGCAATACCAAGGTTTTGAGTTGGGAGCGGACGACTACATCGTCAAACC
TTTTCGTCCTAAGGAATTGGAGTTGCGAATCCTTTCTATTTTAAAAAGAGCCTATCCTGAAAAGGACGATACCCTTATTT
TACCTACTTGTCAGGTCAACTTTAGTCAAGCTTTGATTACCAAAGGAGAATTGGAAATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAAGTTTTATATAACAATCAAAATCGCATTGTTACCTTTGATCAACTCTTAGAAAAAGTTTGGGGTCTGCA
ATATCAAGGCTATGAAAATACTATGATGGCGCATATTCGCAAGATCAGGCAAAAGATTGAAGCCAATCCTTCTAAGCCAG
AATGTTTACTGACAGTTAAGGGCTTGGGTTACAAACTAAAGGTGAGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

99.127

100

0.991
  micA Streptococcus pneumoniae Cp1015

38.197

100

0.389
  vicR Streptococcus mutans UA159

36.207

100

0.367