Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HBB04_RS05065 Genome accession   NZ_CP050260
Coordinates   1169797..1172013 (-) Length   738 a.a.
NCBI ID   WP_122323419.1    Uniprot ID   -
Organism   Pseudomonas coronafaciens strain X-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1164797..1177013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBB04_RS05035 (HBB04_01028) murB 1165597..1166616 (-) 1020 WP_122323416.1 UDP-N-acetylmuramate dehydrogenase -
  HBB04_RS05040 (HBB04_01029) kdsB 1166651..1167415 (-) 765 WP_005892221.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HBB04_RS05045 (HBB04_01030) - 1167412..1167597 (-) 186 WP_004884599.1 Trm112 family protein -
  HBB04_RS05050 (HBB04_01031) lpxK 1167615..1168610 (-) 996 WP_122323418.1 tetraacyldisaccharide 4'-kinase -
  HBB04_RS05055 (HBB04_01032) - 1168610..1169041 (-) 432 WP_005892218.1 biopolymer transporter ExbD -
  HBB04_RS05060 (HBB04_01033) exbB 1169038..1169754 (-) 717 WP_080267902.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HBB04_RS05065 (HBB04_01034) comA 1169797..1172013 (-) 2217 WP_122323419.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HBB04_RS05070 (HBB04_01035) - 1172150..1172938 (-) 789 WP_005892215.1 ABC transporter permease -
  HBB04_RS05075 (HBB04_01036) - 1172935..1173867 (-) 933 WP_005892214.1 ABC transporter ATP-binding protein -
  HBB04_RS05080 (HBB04_01037) - 1174047..1174670 (-) 624 WP_005892213.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80772.13 Da        Isoelectric Point: 10.0938

>NTDB_id=430904 HBB04_RS05065 WP_122323419.1 1169797..1172013(-) (comA) [Pseudomonas coronafaciens strain X-1]
MRTGMIALALGLVALRFLPVLPPIWLLLLMPILALMLLPFRTYPMAFFLVGFTWACVSAQWALNDRLLHRFDGQTLWVQG
NVVGLPSVAEGVVRFELEDARSRRAKLPARIRVAWYGGPDVKSGERWRLALKLKRPGGLVNPDAFDYQAWLLARRIGATG
TVADGQLLTPARGAWRDGIRQRLLAVDAQGREGGLAALVLGDGSGLSRTDWQVLQNTGTVHLLVISGQHIGLLAGVVYAL
IAGLARWGLWPRALPWLPTACALAFVAALGYGLLAGFEVPVRRACVMVGMVLLWRLRFRHLGVVWPLLLSFCAVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWQWWQSWTRAQWLIAIGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPLAL
IGTLLLPVPVVGEGLLWLAGGALEWLFVFLGWVADVLPAWLPSAVPVWAWLISLLGAFVLLLPRGVPMRPLGWPLLLLCV
FPPITPVPMGRVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGERVVVPAIRKSGVRHLDLMLISHADADHAGGA
LAVHRAFPVNRVSGGEVARLAPQLDAGLCENGERWEWDGVVFTTWRWEEAPDGNAGSCILSVEANGERLLLTGDIDVHAE
RAAMDSGFDLRAHWLQAPHHGSRSSSSKRFLQAVAPVGVLISRGHNNAFGHPHPLVMARYRWLGIASYDSAELGAVSLQL
GAFGTPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=430904 HBB04_RS05065 WP_122323419.1 1169797..1172013(-) (comA) [Pseudomonas coronafaciens strain X-1]
ATGCGCACAGGGATGATCGCGCTTGCGCTGGGGCTTGTTGCCCTGCGTTTTCTGCCGGTATTGCCGCCGATCTGGCTATT
GCTGCTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTTCGTACTTATCCAATGGCGTTTTTTCTGGTCGGCTTCACGT
GGGCGTGCGTGTCGGCGCAGTGGGCGCTGAATGATCGCCTGCTGCATCGGTTTGACGGCCAGACGCTGTGGGTGCAGGGC
AACGTGGTCGGGTTGCCGAGTGTTGCAGAAGGCGTGGTGCGTTTCGAACTGGAGGATGCGCGCTCGCGGCGCGCGAAGCT
GCCTGCGCGTATTCGCGTGGCCTGGTACGGCGGCCCCGATGTCAAAAGCGGCGAGCGCTGGCGTCTGGCCCTCAAACTCA
AGCGTCCGGGCGGGCTGGTCAACCCGGATGCCTTCGATTATCAGGCCTGGCTACTGGCCCGGCGCATCGGCGCGACCGGT
ACTGTGGCAGACGGTCAATTGCTGACGCCAGCGCGCGGGGCCTGGCGCGATGGCATTCGTCAGCGGTTGCTGGCGGTCGA
TGCGCAGGGCAGGGAAGGCGGTCTGGCGGCGCTGGTGCTGGGCGACGGCTCGGGCCTGTCGCGCACTGACTGGCAAGTGC
TGCAAAACACCGGCACGGTCCACCTGCTGGTCATTTCCGGTCAGCATATCGGTCTGCTGGCAGGGGTGGTCTATGCGTTG
ATTGCAGGTCTGGCACGTTGGGGGCTATGGCCACGGGCGTTGCCCTGGCTGCCGACGGCGTGTGCATTGGCGTTTGTCGC
GGCGCTGGGCTACGGGCTGCTGGCTGGCTTCGAAGTCCCGGTCCGACGTGCCTGCGTGATGGTGGGCATGGTGTTGCTGT
GGCGCTTGCGCTTTCGGCACCTGGGCGTTGTCTGGCCACTCCTATTGTCATTCTGCGCGGTGCTGATCTTTGAGCCGTTG
GTAACCCTGCAGCCTGGTTTTTGGCTGTCATTCGCGGCAGTGGGCATTCTGATCCTGATCTTCAGTGGTCGTCTCGGCGC
CTGGCAGTGGTGGCAAAGCTGGACGCGCGCGCAATGGTTGATCGCCATTGGCCTGCTGCCAATACTGCTGGCACTGAACC
TGCCGATCAGCCTGAGTGGTCCGTTTGCCAATTTGCTCGCTGTGCCCTGGGTGAGCGTCATCGTCTTGCCGCTGGCACTG
ATCGGCACCTTGCTGCTGCCGGTTCCGGTGGTGGGTGAAGGCCTGCTGTGGCTGGCGGGCGGCGCTCTGGAGTGGCTGTT
CGTGTTTCTCGGCTGGGTGGCCGACGTCCTGCCCGCCTGGCTGCCCAGTGCGGTGCCCGTTTGGGCATGGCTGATAAGCC
TGCTCGGAGCCTTTGTTTTATTGCTGCCCAGAGGTGTGCCGATGCGCCCTCTGGGCTGGCCTTTGTTGCTGCTATGCGTT
TTTCCGCCCATCACACCGGTACCGATGGGGCGGGTCGAGGTGCTGCAGCTCGATGTCGGGCAGGGCCTGGCGATTCTGCT
GCGCACGCGCAATCACACCCTTTTGTATGACGCAGGGCCACGCTTTGGTGAATTCGATATCGGCGAGCGTGTGGTGGTGC
CCGCCATTCGCAAGAGTGGTGTTCGTCATCTTGATCTGATGCTGATCAGCCATGCCGACGCGGATCATGCTGGCGGCGCC
CTGGCGGTTCATCGGGCCTTCCCGGTGAACCGAGTGTCGGGCGGAGAGGTGGCCAGGCTGGCCCCGCAGCTCGACGCCGG
GCTGTGCGAAAACGGCGAACGCTGGGAATGGGACGGCGTCGTGTTCACGACATGGCGCTGGGAGGAGGCCCCCGACGGCA
ACGCGGGCTCCTGCATCCTCAGCGTCGAGGCCAATGGCGAGCGCCTGTTGTTAACGGGTGACATTGATGTACACGCCGAG
CGTGCGGCGATGGACAGCGGCTTCGACCTGCGCGCCCACTGGCTGCAGGCGCCGCACCACGGCAGCCGCAGTTCTTCCTC
CAAGCGGTTTTTGCAGGCAGTCGCGCCGGTTGGTGTACTGATTTCGCGCGGCCACAACAATGCCTTTGGCCATCCTCATC
CACTGGTCATGGCGCGCTATCGGTGGCTGGGTATCGCCAGTTATGACAGCGCCGAACTGGGCGCTGTCAGCCTGCAACTG
GGTGCATTCGGTACACCACAAGCGGAGCGTGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.709

97.019

0.608
  comA Ralstonia pseudosolanacearum GMI1000

32.388

100

0.371