Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HBB04_RS05060 Genome accession   NZ_CP050260
Coordinates   1169038..1169754 (-) Length   238 a.a.
NCBI ID   WP_080267902.1    Uniprot ID   -
Organism   Pseudomonas coronafaciens strain X-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1164038..1174754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBB04_RS05035 (HBB04_01028) murB 1165597..1166616 (-) 1020 WP_122323416.1 UDP-N-acetylmuramate dehydrogenase -
  HBB04_RS05040 (HBB04_01029) kdsB 1166651..1167415 (-) 765 WP_005892221.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HBB04_RS05045 (HBB04_01030) - 1167412..1167597 (-) 186 WP_004884599.1 Trm112 family protein -
  HBB04_RS05050 (HBB04_01031) lpxK 1167615..1168610 (-) 996 WP_122323418.1 tetraacyldisaccharide 4'-kinase -
  HBB04_RS05055 (HBB04_01032) - 1168610..1169041 (-) 432 WP_005892218.1 biopolymer transporter ExbD -
  HBB04_RS05060 (HBB04_01033) exbB 1169038..1169754 (-) 717 WP_080267902.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HBB04_RS05065 (HBB04_01034) comA 1169797..1172013 (-) 2217 WP_122323419.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HBB04_RS05070 (HBB04_01035) - 1172150..1172938 (-) 789 WP_005892215.1 ABC transporter permease -
  HBB04_RS05075 (HBB04_01036) - 1172935..1173867 (-) 933 WP_005892214.1 ABC transporter ATP-binding protein -
  HBB04_RS05080 (HBB04_01037) - 1174047..1174670 (-) 624 WP_005892213.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25905.46 Da        Isoelectric Point: 7.9112

>NTDB_id=430903 HBB04_RS05060 WP_080267902.1 1169038..1169754(-) (exbB) [Pseudomonas coronafaciens strain X-1]
MLEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAVGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRAD
SPLGEILAAGLTNSRHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSTGATANAGV
LASGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=430903 HBB04_RS05060 WP_080267902.1 1169038..1169754(-) (exbB) [Pseudomonas coronafaciens strain X-1]
ATGCTAGAGTGGCGGCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCGGGCGGCTGGATGATGCTGCC
GATCATTTTAAGCTCCATCGCCGCTGTCGGCATCATTATCGAACGCCTGTGGACGCTGCGCGCCAGCCGGATTGCGCCAC
CGCATCTGTTGGGGCAGGCCTGGCAGTGGATTCAGGAAAAGAAGCTGGACAACGAAAAACTCAAGCAACTGCGCGCAGAT
TCGCCGCTGGGCGAGATCCTGGCTGCCGGTCTGACCAACTCCAGGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGA
GGCCGCCGCTCGCGTCATTCATGACCTGGAACGCTACCTGAGCGCACTGGGCTCGATCGCCGCGATGGCGCCTCTGCTCG
GTCTGCTGGGCACAGTATTGGGCATGATCGACATTTTCGGCTCGTTCAACAGCACCGGTGCCACGGCCAATGCCGGTGTG
CTGGCGAGTGGTATTTCCAAGGCGCTTATCTGTACTGCGTCTGGCCTTATCGTTGCGATCCCTGCGATCTTCTTTCACCG
CTTTCTGCAAAGCCGTGTCGATGAACTGGTGGTCGGTATGGAGCAGCAAGCGATTCGTCTGGTCGAAGTGGTTCAGGGCG
ACCGTGATGTCGATCTGATCGACGCCAAAATAGACCTCAAATCGCTGGCCAGGGCAGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

77.143

88.235

0.681