Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   VEJY3_RS04730 Genome accession   NC_016613
Coordinates   1034814..1037072 (+) Length   752 a.a.
NCBI ID   WP_041170202.1    Uniprot ID   -
Organism   Vibrio sp. EJY3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1029814..1042072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEJY3_RS04705 (VEJY3_04515) - 1030166..1030735 (-) 570 WP_014231282.1 PilZ domain-containing protein -
  VEJY3_RS04710 (VEJY3_04520) lolC 1030987..1032195 (+) 1209 WP_014231283.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  VEJY3_RS04715 (VEJY3_04525) lolD 1032188..1032895 (+) 708 WP_014231284.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  VEJY3_RS04720 (VEJY3_04530) lolE 1032898..1034142 (+) 1245 WP_014231285.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  VEJY3_RS04725 (VEJY3_04535) - 1034296..1034805 (-) 510 WP_014231286.1 DUF2062 domain-containing protein -
  VEJY3_RS04730 (VEJY3_04540) comEC 1034814..1037072 (+) 2259 WP_041170202.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VEJY3_RS04735 (VEJY3_04545) msbA 1037104..1038852 (+) 1749 WP_014231288.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  VEJY3_RS04740 (VEJY3_04550) lpxK 1038856..1039863 (+) 1008 WP_014231289.1 tetraacyldisaccharide 4'-kinase -
  VEJY3_RS04745 (VEJY3_04555) - 1039844..1040023 (+) 180 WP_014231290.1 Trm112 family protein -
  VEJY3_RS04750 (VEJY3_04560) kdsB 1040023..1040781 (+) 759 WP_014231291.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84501.34 Da        Isoelectric Point: 8.3744

>NTDB_id=43083 VEJY3_RS04730 WP_041170202.1 1034814..1037072(+) (comEC) [Vibrio sp. EJY3]
MTLSEKSCTLALFVASIVSSAWWPIMPDWRWLLLGIITTGSIIKLRRGLISIGVILGLMVVIIHGNVLEYQRQALFNVGE
NSTITGKVDSSFNQISHGYEGLVTIKQVGDQSLLPFLKPKVRFITTFPIPVNSEFTTTAQVKPIIGLRNEAGFDAEKQAM
GNGILARMIVTGDAHWIIRNGSSVRQSIINLVMDDISHLDHFPLISALVFADRSWLSGDDWQGLRDSGLLHLASISGLHI
GMAFSFGFWLGVSVRSVFPRYQVVPSITGLTVALCYAWLADFSLPTTRAVSVCVIYIVLKYGLVHWSTWRVLLLAVAFQL
LIQPFASFSMSFWLSYLSVGMVLLVINFVRFNNSSWRGKLRTLFVTQLALSVFVIPISGYFFSGFSLSSIAYNLVFIPWF
GFVVVPLMFIALSTSLLLPAFSPIVWQLMDFSLWPLSESLQYAFGTWQPLSIELTWILFSLCTFLVLKRLLLWQGWLLLC
VITIIISSWNGQKSTSWRIDVLDVGHGLAVLVEKEGKALIYDTGKSWPEGSVAEQVIIPVLHRRGFREVDTLVLSHSDND
HAGGRQVIETHLKPSHKRSSQDFSGYQPCVSGDNWTWQQLDIEVLWPPQMVTRAYNPHSCVFRLRDRESDFSMLFTGDIE
SISEWILLREPEKLSSDVMLVPHHGSKSSSNPLFIHAVSPTLAVASLAKNNQWGMPADKVVTSYLNAGSLWLDTGEGGQV
TIRVTKHKWDFVTKRSDTFEPWYRQMLRKGLE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=43083 VEJY3_RS04730 WP_041170202.1 1034814..1037072(+) (comEC) [Vibrio sp. EJY3]
ATGACTCTCTCAGAAAAAAGTTGCACCTTGGCGTTATTTGTCGCAAGCATTGTCTCATCGGCATGGTGGCCGATAATGCC
AGATTGGCGCTGGCTGCTGCTGGGAATAATTACCACTGGTTCAATAATTAAATTACGTCGTGGCTTAATTAGCATAGGCG
TAATTTTGGGCTTAATGGTAGTCATCATCCACGGCAATGTATTGGAGTATCAGCGACAAGCCCTTTTTAATGTAGGGGAG
AATAGTACCATAACTGGCAAAGTTGACAGCTCTTTTAATCAAATAAGTCATGGATATGAAGGACTCGTGACGATAAAACA
AGTGGGTGATCAAAGTCTGTTACCTTTTCTTAAACCTAAAGTCCGTTTTATCACCACCTTTCCTATCCCTGTTAACAGTG
AATTTACGACCACGGCTCAGGTAAAGCCCATTATTGGGTTACGTAACGAAGCGGGTTTCGACGCTGAAAAGCAGGCAATG
GGAAATGGTATTTTAGCCAGAATGATTGTGACTGGCGATGCGCACTGGATTATTCGTAACGGAAGTTCTGTACGTCAGTC
GATAATCAATCTGGTAATGGATGATATCTCCCATCTAGACCACTTTCCGTTAATCAGTGCTCTGGTATTTGCTGATAGAA
GCTGGCTTTCTGGTGATGACTGGCAAGGGCTGAGAGACAGTGGATTATTGCACCTGGCCTCTATCTCCGGGCTGCACATT
GGAATGGCTTTTAGCTTTGGTTTTTGGCTCGGTGTAAGTGTTCGCTCCGTTTTCCCGCGTTATCAAGTGGTGCCTTCAAT
CACGGGGTTAACCGTCGCGCTATGTTATGCCTGGCTCGCTGATTTTTCTCTGCCAACCACTCGTGCCGTATCGGTTTGTG
TCATCTACATTGTTTTAAAATACGGTTTGGTTCACTGGAGTACCTGGCGAGTGTTGCTACTGGCGGTTGCTTTTCAGTTA
CTTATTCAGCCTTTCGCATCTTTTAGTATGAGTTTCTGGTTGTCTTACCTCTCTGTGGGTATGGTGCTGTTGGTCATTAA
CTTTGTGCGGTTCAATAACAGTAGCTGGCGAGGAAAACTGCGAACCTTGTTTGTGACTCAACTTGCCTTGAGTGTATTTG
TCATACCTATCAGTGGCTATTTTTTCTCTGGTTTCAGCTTATCGTCCATCGCTTATAACCTTGTGTTTATCCCATGGTTT
GGGTTTGTCGTCGTTCCTTTAATGTTTATCGCGTTATCTACTTCTTTATTACTACCCGCATTCTCGCCAATAGTTTGGCA
ATTGATGGATTTCTCTTTATGGCCGTTAAGTGAATCTCTTCAGTATGCCTTTGGTACGTGGCAACCATTGTCGATAGAAC
TTACGTGGATACTGTTTTCTCTCTGTACTTTCTTGGTTTTGAAGCGGTTATTGCTTTGGCAGGGTTGGTTATTGCTGTGC
GTTATTACCATCATCATTTCAAGTTGGAATGGGCAAAAAAGTACCAGTTGGCGAATCGATGTTCTCGATGTCGGTCATGG
TCTTGCCGTTCTGGTAGAAAAAGAGGGTAAAGCTCTGATTTACGATACTGGAAAATCCTGGCCGGAGGGCAGTGTTGCGG
AGCAGGTGATTATACCTGTGTTACATCGCAGAGGATTTAGAGAGGTTGATACCTTGGTTCTCAGTCATTCAGACAATGAC
CACGCAGGAGGAAGGCAAGTGATTGAAACGCACCTCAAGCCGAGCCATAAACGCAGCAGCCAAGATTTTAGTGGGTATCA
ACCTTGTGTGAGCGGTGATAATTGGACGTGGCAGCAACTCGATATCGAAGTGCTCTGGCCACCCCAAATGGTCACACGAG
CCTACAACCCTCACTCGTGTGTCTTTAGACTCAGAGACCGAGAATCTGATTTTTCCATGCTGTTCACGGGTGATATTGAG
TCGATTAGTGAGTGGATACTTCTTCGTGAGCCTGAAAAATTATCTAGTGATGTGATGCTCGTTCCTCATCACGGTAGCAA
AAGTTCCTCCAATCCTCTTTTTATCCATGCAGTCTCTCCAACATTAGCGGTAGCATCACTGGCGAAAAACAATCAGTGGG
GAATGCCTGCTGATAAGGTAGTGACCTCGTATCTCAATGCAGGGTCACTATGGCTTGATACTGGTGAGGGTGGACAAGTT
ACTATCCGAGTAACGAAACATAAGTGGGATTTTGTAACCAAACGCAGTGATACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGGTTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-474)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

66.888

100

0.669
  comEC Vibrio campbellii strain DS40M4

63.431

100

0.634
  comEC Vibrio cholerae strain A1552

38.645

100

0.387

Multiple sequence alignment